View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11555_high_8 (Length: 303)
Name: NF11555_high_8
Description: NF11555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11555_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 22 - 295
Target Start/End: Original strand, 8136822 - 8137095
Alignment:
| Q |
22 |
tagccacttcaagtgcttccattcatgaactaaaactttgttactattacctctttgaaccttatccaagtcatcaatgttactaagtgatacaggtcca |
121 |
Q |
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| T |
8136822 |
tagccacttcaagtgcttccattcatgaactaaaactttgttactattacctctttgaaccttatccaagtcatcaatgttactaagtgatacaggtcca |
8136921 |
T |
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| Q |
122 |
atacaccaaactttgtcatttttcatctttttaaagtctgttgcatatgttggctctaactcctcaaaagaatttgtgattatcccataactactcattt |
221 |
Q |
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| T |
8136922 |
atacaccaaactttgtcatttttcatctttttaaagtctgttgcatatgttggctctaactcctcaaaagaatttgtgattatcccataactactcattt |
8137021 |
T |
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| Q |
222 |
cagcttcaagcatatcctcattaaattgtttcaaggcttcattgatctttgttgaccctagtcctgtctgtgct |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8137022 |
cagcttcaagcatatcctcattaaattgtttcaaggcttcattgatctttgttgaccctagtcctgtctgtgct |
8137095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 41517886 - 41517676
Alignment:
| Q |
18 |
aatctagccacttcaagtgcttccattcatgaactaaaactttgttactattacctctttgaaccttatccaagtcatcaatgttactaagtgatacagg |
117 |
Q |
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|||| ||||||||||| |||| |||||||| || | |||| || ||| ||||||||||||||| ||||||||||| |||| ||||||||||||||||||| |
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| T |
41517886 |
aatcaagccacttcaaatgctcccattcatcaattgaaaccttattattattacctctttgaatcttatccaagtaatcagtgttactaagtgatacagg |
41517787 |
T |
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| Q |
118 |
tccaatacaccaaactttgtcatttttcatctttttaaagtctgttgcatatgttggctctaactcctcaaaagaatttgtgattatcccataactactc |
217 |
Q |
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| T |
41517786 |
accaatgcaccaaactttgtcattttttacctttttaaattcccttgcatatgctggctctaactcttcaaaagaattcatgattacaccataagtaccc |
41517687 |
T |
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| Q |
218 |
atttcagcttc |
228 |
Q |
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||||||||||| |
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| T |
41517686 |
atttcagcttc |
41517676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 41536865 - 41536627
Alignment:
| Q |
18 |
aatctagccacttcaagtgcttccattcatgaactaaaactttgttactatta---cctctttgaaccttatccaagtcatcaatgttactaagtgatac |
114 |
Q |
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|||| |||||||||||||||| |||||||| | | |||| || ||| ||||| |||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
41536865 |
aatcaagccacttcaagtgctcccattcatcatttgaaaccttattattattattacctctttgaaccttatccaagtaatcagtgttactaagtgatac |
41536766 |
T |
|
| Q |
115 |
aggtccaatacaccaaactttgtcatttttcatctttttaaagtctgttgcatatgttggctctaactcctcaaaagaatttgtgattatcccataacta |
214 |
Q |
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||| ||||||||||||||||| |||||| | | ||||||| | || |||||||||||||||||||||| ||||||||||| || |||||||||||| |
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| T |
41536765 |
aggaccaatacaccaaactttatcatttcttacctttttataatcccttgcatatgttggctctaactcttcaaaagaattcacgagcatcccataacta |
41536666 |
T |
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| Q |
215 |
ctcatttcagcttcaagcatatcctcattaaattgtttc |
253 |
Q |
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| T |
41536665 |
cctatttcagcttcaagcaagtcatcattaaattgtttc |
41536627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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