View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11555_low_11 (Length: 272)

Name: NF11555_low_11
Description: NF11555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11555_low_11
NF11555_low_11
[»] chr3 (10 HSPs)
chr3 (16-170)||(22628610-22628763)
chr3 (17-121)||(22633336-22633440)
chr3 (36-101)||(22440621-22440686)
chr3 (17-103)||(22448593-22448681)
chr3 (1-92)||(22360927-22361018)
chr3 (1-133)||(22465819-22465954)
chr3 (1-74)||(22351760-22351832)
chr3 (36-101)||(22434556-22434624)
chr3 (36-121)||(22355616-22355706)
chr3 (58-95)||(22427397-22427434)


Alignment Details
Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 22628610 - 22628763
Alignment:
Q  16 aaagtccacttgaaggaatatgaatctcaaatccagtgatgaccatcacctgcagttcacaccaaattatcaatataaaacacaataatgcaacgattac 115  Q
    ||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  22628610 aaagtccacttgaagaaatgtgaatctcaaatccattgatgaccatcacctgcagttcacaccaaattatcaatatataagacaataatgcaacgattac 22628709  T
Q  116 acaatttaatataagaattgaaaacattagcccttctagtatttagaaccttgcc 170  Q
    ||||||||||||||| |||| ||| |||| || ||| ||  ||||||||||||||    
T  22628710 acaatttaatataaggattggaaa-attatcctttcgagggtttagaaccttgcc 22628763  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 22633336 - 22633440
Alignment:
Q  17 aagtccacttgaaggaatatgaatctcaaatccagtgatgaccatcacctgcagttcacaccaaattatcaatataaaacacaataatgcaacgattaca 116  Q
    |||| ||||||||| ||| ||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |    
T  22633336 aagttcacttgaagaaatgtgaatctcaaatccactgatggccatcacctgcagttcacaccaaattattaatataaaacacaataatgcaatgattaga 22633435  T
Q  117 caatt 121  Q
    |||||    
T  22633436 caatt 22633440  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 22440621 - 22440686
Alignment:
Q  36 tgaatctcaaatccagtgatgaccatcacctgcagttcacaccaaattatcaatataaaacacaat 101  Q
    |||||||||||||||  ||||||||||||||||||||||  |||||||||||||||||||||||||    
T  22440621 tgaatctcaaatccacagatgaccatcacctgcagttcaatccaaattatcaatataaaacacaat 22440686  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 22448593 - 22448681
Alignment:
Q  17 aagtccacttgaaggaatatgaatctcaaatccagtgatgaccatcacctgcagttcacaccaaattatca--atataaaacacaataa 103  Q
    |||| ||||||||| ||  |||||||||||| || ||||| ||||||||||||||||||||||||||||||  ||||||||||||||||    
T  22448593 aagttcacttgaagaaaagtgaatctcaaattcactgatggccatcacctgcagttcacaccaaattatcaatatataaaacacaataa 22448681  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 22360927 - 22361018
Alignment:
Q  1 agcaatgctgataggaaagtccacttgaaggaatatgaatctcaaatccagtgatgaccatcacctgcagttcacaccaaattatcaatata 92  Q
    |||||||| ||||  ||||||||||||||| ||| |||||||||||| || | ||| ||||||||| |||||||||||||||||| ||||||    
T  22360927 agcaatgcagatataaaagtccacttgaagaaatgtgaatctcaaattcactaatggccatcacctacagttcacaccaaattattaatata 22361018  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 22465819 - 22465954
Alignment:
Q  1 agcaatgctgataggaaagtccacttgaaggaatatgaatctcaaatccagtgatgaccatcacctgc-agttcacacca--aatta-tcaatataaaac 96  Q
    |||||||||||||  | ||||||||||| | | |  |||||||||||||| |||| |||||||||||| ||||||||| |  ||||| ||||||| ||||    
T  22465819 agcaatgctgatataatagtccacttgatgaatttcgaatctcaaatccactgataaccatcacctgcaagttcacacaaataattattcaatat-aaac 22465917  T
Q  97 acaataatgcaacgattacacaatttaatataagaat 133  Q
    | ||||||| |||||||| ||| ||| ||||||||||    
T  22465918 aaaataatgaaacgattagacagtttcatataagaat 22465954  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 22351760 - 22351832
Alignment:
Q  1 agcaatgctgataggaaagtccacttgaaggaatatgaatctcaaatccagtgatgaccatcacctgcagttca 74  Q
    ||||| |||||||| ||||||||||||||  ||| |||||||||||| || ||||| | |||||||||||||||    
T  22351760 agcaacgctgatagaaaagtccacttgaaa-aatgtgaatctcaaattcactgatggcaatcacctgcagttca 22351832  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 22434556 - 22434624
Alignment:
Q  36 tgaatctcaaatccagtgatga---ccatcacctgcagttcacaccaaattatcaatataaaacacaat 101  Q
    ||||||| ||||||| ||||||   | |||||||| ||||||||||||| ||||||||| |||||||||    
T  22434556 tgaatctgaaatccactgatgataactatcacctgtagttcacaccaaaatatcaatatgaaacacaat 22434624  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 22355616 - 22355706
Alignment:
Q  36 tgaatctcaaatccagtgatgaccatcacctgcagttcacacc-aaattatca----atataaaacacaataatgcaacgattacacaatt 121  Q
    |||||||||||||||  || |  |||||||||||||||||||| ||||||| |    |||||||||||||||||| || ||||| ||||||    
T  22355616 tgaatctcaaatccaccgacggtcatcacctgcagttcacaccaaaattattaatatatataaaacacaataatggaatgattagacaatt 22355706  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 95
Target Start/End: Original strand, 22427397 - 22427434
Alignment:
Q  58 ccatcacctgcagttcacaccaaattatcaatataaaa 95  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  22427397 ccatcacatgcggttcacaccaaattatcaatataaaa 22427434  T

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