View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11555_low_12 (Length: 251)
Name: NF11555_low_12
Description: NF11555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11555_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 3304217 - 3304000
Alignment:
| Q |
19 |
agtcaacacttggtaaaatcaaagaaagaagaacaagatttccatttcagtctgataatgaatcaggaagctaccgagggtccaaagctcctagaattgg |
118 |
Q |
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| T |
3304217 |
agtcaacacttggtaaaatcaaagaaagaagaacaagatttccatttcagtctgataatgaatcaggaagctacagagggtccaaagctcctagaattgg |
3304118 |
T |
|
| Q |
119 |
tgaccctcgaatggctccctatttcattgaagagactcaagttgtggggtttgagtccccaacaaatgaattgattcgtcgtttggtgggtggagacaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3304117 |
tgaccctcgaatggctccctatttcattgaagagactcaagttgtgggatttgagtccccaacaaatgaattgattcgtcgtttggtgggtggagacaat |
3304018 |
T |
|
| Q |
219 |
gagcacactttggtttct |
236 |
Q |
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|||||||| ||||||||| |
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| T |
3304017 |
gagcacacgttggtttct |
3304000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 35 - 241
Target Start/End: Complemental strand, 3357619 - 3357413
Alignment:
| Q |
35 |
aatcaaagaaagaagaacaagatttccatttcagtctgataatgaatcaggaagctaccgagggtccaaagctcctagaattggtgaccctcgaatggct |
134 |
Q |
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||||||||||||||| |||| ||| |||||||||| | || ||||| ||||||| ||||| | ||||||||||||||||||||||||||||||||| |
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| T |
3357619 |
aatcaaagaaagaagtacaatgtttgagtttcagtctggaagtggatcagaaagctacagagggactaaagctcctagaattggtgaccctcgaatggct |
3357520 |
T |
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| Q |
135 |
ccctatttcattgaagagactcaagttgtggggtttgagtccccaacaaatgaattgattcgtcgtttggtgggtggagacaatgagcacactttggttt |
234 |
Q |
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|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||| | || ||||||| |
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| T |
3357519 |
ccttatttcattgaagagactcaagttgtagggtttgagtccccaacaaatgaattggttcgtcttttggtgggtggagagaatgaacggacgttggttt |
3357420 |
T |
|
| Q |
235 |
ctctgct |
241 |
Q |
| |
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|| |||| |
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| T |
3357419 |
ctgtgct |
3357413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 3721513 - 3721630
Alignment:
| Q |
119 |
tgaccctcgaatggctccctatttcattgaagagactcaagttgtggggtttgagtccccaacaaatgaattgattcgtcgtttggtgggtggagacaat |
218 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||| ||||||||| |||| |||| |
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| T |
3721513 |
tgaccctcgaatggctccttatttcattgaagagactcaagttgttgggtttgagtccccaacaaatgaattggttagtcttttggtggggggagccaat |
3721612 |
T |
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| Q |
219 |
gagcacactttggtttct |
236 |
Q |
| |
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|||| ||| | ||||||| |
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| T |
3721613 |
gagcgcacatgggtttct |
3721630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 3310884 - 3310715
Alignment:
| Q |
25 |
cacttggtaaaatcaaagaaagaagaacaagatttccatttcagtctgataatgaatcaggaagctaccgagggtccaaagctcctagaattggtgaccc |
124 |
Q |
| |
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|||||||||||||||||||||||| |||| | ||| ||||||||||| | |||||| |||||||| |||| | |||||||||||||||| | | | |
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| T |
3310884 |
cacttggtaaaatcaaagaaagaatgacaacacttctgtttcagtctgaaagtgaatctggaagctatagaggaactaaagctcctagaattgataatac |
3310785 |
T |
|
| Q |
125 |
tcgaatggct-ccctatttcattgaagagactcaagttgtggggtttgagtccccaacaaatgaattgatt |
194 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||| ||||||| |||| | ||||||||||| |
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| T |
3310784 |
tcgaatggcttccctatt-cattgaagagactcaagttgtggggattgagtctccaagagatgaattgatt |
3310715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 63 - 191
Target Start/End: Complemental strand, 3322445 - 3322317
Alignment:
| Q |
63 |
tttcagtctgataatgaatcaggaagctaccgagggtccaaagctcctagaattggtgaccctcgaatggctccctatttcattgaagagactcaagttg |
162 |
Q |
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||||| ||||| | || ||||| ||||||||||||| | | | |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
3322445 |
tttcattctgaaagtggatcagaaagctaccgagggactacaactcctagaattggtgaccctcgaatggctctttatttccctgaagagactcaagttg |
3322346 |
T |
|
| Q |
163 |
tggggtttgagtccccaacaaatgaattg |
191 |
Q |
| |
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||||||||||| |||||| |||||||| |
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| T |
3322345 |
tggggtttgaggatccaacagatgaattg |
3322317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 3200896 - 3200985
Alignment:
| Q |
102 |
aaagctcctagaattggtgaccctcgaatggctccctatttcattgaagagactcaagttgtggggtttgagtccccaacaaatgaattg |
191 |
Q |
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|||||||| ||||||| ||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
3200896 |
aaagctccaagaattgatgatactcgaatggctccttatttcattcaagagactcaagttgtggggtttgagtccccaaaagatgaattg |
3200985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 207
Target Start/End: Complemental strand, 3221644 - 3221552
Alignment:
| Q |
115 |
ttggtgaccctcgaatggctccctatttcattgaagagactcaagttgtggggtttgagtccccaacaaatgaattgattcgtcgtttggtgg |
207 |
Q |
| |
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||||||| | |||||||||| | ||||||||||||||| ||||||||||| |||||||| |||| | |||||||| || || ||||||||| |
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| T |
3221644 |
ttggtgatcttcgaatggcttcgcatttcattgaagagaaccaagttgtgggatttgagtcgccaagagatgaattggttagttgtttggtgg |
3221552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 41947392 - 41947316
Alignment:
| Q |
115 |
ttggtgaccctcgaatggctccctatttcattgaagagactcaagttgtggggtttgagtccccaacaaatgaattg |
191 |
Q |
| |
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||||||| | |||||||||| | |||||||| ||||||||||||||||||| |||||||| |||| | |||||||| |
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| T |
41947392 |
ttggtgatcttcgaatggcttcgcatttcattaaagagactcaagttgtgggatttgagtcaccaagagatgaattg |
41947316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 207
Target Start/End: Complemental strand, 49386603 - 49386515
Alignment:
| Q |
119 |
tgaccctcgaatggctccctatttcattgaagagactcaagttgtggggtttgagtccccaacaaatgaattgattcgtcgtttggtgg |
207 |
Q |
| |
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||||| |||||||||| | | ||||||||||||| ||||||||||| |||||||| |||| | |||||||| || || ||||||||| |
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| T |
49386603 |
tgaccttcgaatggcttcacaattcattgaagagaaccaagttgtgggatttgagtcgccaagagatgaattggttagttgtttggtgg |
49386515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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