View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11555_low_15 (Length: 238)

Name: NF11555_low_15
Description: NF11555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11555_low_15
NF11555_low_15
[»] chr1 (12 HSPs)
chr1 (1-223)||(37849556-37849778)
chr1 (112-223)||(48178963-48179074)
chr1 (112-217)||(40026811-40026916)
chr1 (112-221)||(49440756-49440865)
chr1 (116-212)||(49540891-49540987)
chr1 (112-223)||(2418173-2418284)
chr1 (112-223)||(40140562-40140673)
chr1 (112-223)||(41185608-41185719)
chr1 (112-223)||(47873495-47873606)
chr1 (112-207)||(49287027-49287121)
chr1 (167-223)||(45196425-45196481)
chr1 (35-109)||(29241514-29241588)
[»] chr7 (3 HSPs)
chr7 (8-103)||(1903317-1903411)
chr7 (8-105)||(1879539-1879636)
chr7 (112-207)||(32347838-32347933)
[»] chr6 (1 HSPs)
chr6 (4-106)||(29890673-29890779)
[»] chr3 (6 HSPs)
chr3 (112-211)||(14963905-14964004)
chr3 (1-112)||(25030497-25030609)
chr3 (167-223)||(39193517-39193573)
chr3 (1-109)||(41507757-41507865)
chr3 (36-108)||(8676346-8676419)
chr3 (66-107)||(50663023-50663064)
[»] chr2 (1 HSPs)
chr2 (44-109)||(5676843-5676908)
[»] chr5 (2 HSPs)
chr5 (112-223)||(31266390-31266501)
chr5 (167-223)||(43156663-43156719)
[»] chr8 (1 HSPs)
chr8 (44-109)||(33650593-33650659)
[»] chr4 (3 HSPs)
chr4 (49-109)||(21639435-21639496)
chr4 (112-145)||(55773577-55773610)
chr4 (112-145)||(55837788-55837821)


Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 37849556 - 37849778
Alignment:
Q  1 tttatacaacttgtttaaaagaagcttgagtacacaactaaccaaacttatgcaaatataatcagaacctcatcacgtcttaaccataaagtggtttagc 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37849556 tttatacaacttgtttaaaagaagtttgagtacacaactaaccaaacttatgcaaatataatcagaacctcatcacgtcttaactataaagtggtttagc 37849655  T
Q  101 tcatgatgaactctcgaaattgtggttgggttacttattcaacaaaggaagatcgcgagagggtgtttgactttgtggttttgcataatataatatttgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37849656 tcatgatgaactctcgaaattgtggttgggttacttattcaacaaaggaagatcgagagagggtgtttgactttgtggttttgcataatataatatttgt 37849755  T
Q  201 tgtcactaacaaagccaacatag 223  Q
    |||||||||||| ||||||||||    
T  37849756 tgtcactaacaaggccaacatag 37849778  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 223
Target Start/End: Original strand, 48178963 - 48179074
Alignment:
Q  112 tctcgaaattgtggttgggttacttattcaacaaaggaagatcgcgagagggtgtttgactttgtggttttgcataatataatatttgttgtcactaaca 211  Q
    ||||||||||||||||||||||||||||| |||| |  ||||   | ||||||  |||||||||| ||||||||||||||||||| ||||||||||||||    
T  48178963 tctcgaaattgtggttgggttacttattcgacaacgagagatgcagggagggttgttgactttgtagttttgcataatataatatatgttgtcactaaca 48179062  T
Q  212 aagccaacatag 223  Q
    | ||||||||||    
T  48179063 atgccaacatag 48179074  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 112 - 217
Target Start/End: Original strand, 40026811 - 40026916
Alignment:
Q  112 tctcgaaattgtggttgggttacttattcaacaaaggaagatcgcgagagggtgtttgactttgtggttttgcataatataatatttgttgtcactaaca 211  Q
    ||||||||||||||||||||| ||||||| |||| || | |||  | ||||||  |||||||||||||||||||||||||||||| |||||||||| |||    
T  40026811 tctcgaaattgtggttgggttgcttattcgacaatgggaaatctagggagggttgttgactttgtggttttgcataatataatatatgttgtcactgaca 40026910  T
Q  212 aagcca 217  Q
    | ||||    
T  40026911 aggcca 40026916  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 49440865 - 49440756
Alignment:
Q  112 tctcgaaattgtggttgggttacttattcaacaaaggaagatcgcgagagggtgtttgactttgtggttttgcataatataatatttgttgtcactaaca 211  Q
    ||||| ||||||||||||||||||||||| |||| |||| |||  | ||||||  ||||||||||| |||| ||||||||||||| ||| |||||| |||    
T  49440865 tctcgtaattgtggttgggttacttattctacaatggaaaatcaagggagggttgttgactttgtgatttttcataatataatatatgtagtcactgaca 49440766  T
Q  212 aagccaacat 221  Q
    | ||||||||    
T  49440765 aggccaacat 49440756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 212
Target Start/End: Complemental strand, 49540987 - 49540891
Alignment:
Q  116 gaaattgtggttgggttacttattcaacaaaggaagatcgcgagagggtgtttgactttgtggttttgcataatataatatttgttgtcactaacaa 212  Q
    ||||||||||||||||||||||||| |||| |||| ||   | ||||||  || |||||||||||||||||||| |||||| |||||||||||||||    
T  49540987 gaaattgtggttgggttacttattcgacaacggaaaattcagggagggttgttaactttgtggttttgcataatttaatatatgttgtcactaacaa 49540891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 223
Target Start/End: Complemental strand, 2418284 - 2418173
Alignment:
Q  112 tctcgaaattgtggttgggttacttattcaacaaaggaagatcgcgagagggtgtttgactttgtggttttgcataatataatatttgttgtcactaaca 211  Q
    |||| |||||||| ||||||||||||||| |||| || | |||  | ||||||  |||||||| |||||| |||||||||||||| |||||| ||| |||    
T  2418284 tctcaaaattgtgattgggttacttattcgacaatgggaaatccagggagggttgttgactttatggtttcgcataatataatatatgttgttactgaca 2418185  T
Q  212 aagccaacatag 223  Q
    | ||||||||||    
T  2418184 aggccaacatag 2418173  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 223
Target Start/End: Original strand, 40140562 - 40140673
Alignment:
Q  112 tctcgaaattgtggttgggttacttattcaacaaaggaagatcgcgagagggtgtttgactttgtggttttgcataatataatatttgttgtcactaaca 211  Q
    |||| |||||||||||||||||||||||| | |  |||| | |  | ||||||  |||||||| ||||||| ||||||||||||| |||||||||| |||    
T  40140562 tctcaaaattgtggttgggttacttattcgatagtggaaaaaccagggagggttgttgactttatggttttacataatataatatatgttgtcactgaca 40140661  T
Q  212 aagccaacatag 223  Q
    | ||||||||||    
T  40140662 aggccaacatag 40140673  T

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Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 223
Target Start/End: Original strand, 41185608 - 41185719
Alignment:
Q  112 tctcgaaattgtggttgggttacttattcaacaaaggaagatcgcgagagggtgtttgactttgtggttttgcataatataatatttgttgtcactaaca 211  Q
    |||| ||||||||| |||||||||||||||||||  ||| || | ||| ||||  |||||||||||||||| ||| ||||||||| |||  |||||||||    
T  41185608 tctcaaaattgtggatgggttacttattcaacaatagaaaatagagagtgggttgttgactttgtggttttacatgatataatatatgtcatcactaaca 41185707  T
Q  212 aagccaacatag 223  Q
    | ||||| ||||    
T  41185708 aggccaagatag 41185719  T

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Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 223
Target Start/End: Original strand, 47873495 - 47873606
Alignment:
Q  112 tctcgaaattgtggttgggttacttattcaacaaaggaagatcgcgagagggtgtttgactttgtggttttgcataatataatatttgttgtcactaaca 211  Q
    |||| ||||||||||||||||||||||   ||||||| | |||    || |||  |||||||||| |||||||||||||| |||| |||||||||| |||    
T  47873495 tctcaaaattgtggttgggttacttatatgacaaagggaaatccgtggatggttgttgactttgtagttttgcataatatgatatatgttgtcactgaca 47873594  T
Q  212 aagccaacatag 223  Q
    | ||||||||||    
T  47873595 aggccaacatag 47873606  T

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Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 207
Target Start/End: Original strand, 49287027 - 49287121
Alignment:
Q  112 tctcgaaattgtggttgggttacttattcaacaaaggaagatcgcgagagggtgtttgactttgtggttttgcataatataatatttgttgtcact 207  Q
    |||||||||||||||||||||||||||||||||| |||| ||   |  || ||  |||||  ||||||||||||||||||||||| ||||||||||    
T  49287027 tctcgaaattgtggttgggttacttattcaacaatggaaaataaagtaagagttgttgac-atgtggttttgcataatataatatatgttgtcact 49287121  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 45196425 - 45196481
Alignment:
Q  167 ttgactttgtggttttgcataatataatatttgttgtcactaacaaagccaacatag 223  Q
    |||||||||||||||||| ||||||||||| ||||||||| ||||  ||||||||||    
T  45196425 ttgactttgtggttttgcgtaatataatatatgttgtcaccaacatggccaacatag 45196481  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 29241514 - 29241588
Alignment:
Q  35 caactaaccaaacttatgcaaatataatcagaacctcatcacgtcttaaccataaagtggtttagctcatgatga 109  Q
    |||| ||| ||||||||||||| || |||| ||| |||||| |||||||||| |||| | |||| ||||||||||    
T  29241514 caacgaactaaacttatgcaaacattatcataacatcatcatgtcttaaccacaaagggttttacctcatgatga 29241588  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 1903411 - 1903317
Alignment:
Q  8 aacttgtttaaaagaagcttgagtacacaactaaccaaacttatgcaaatataatcagaacctcatcacgtcttaaccataaagtggtttagctca 103  Q
    |||||||||||||||||| ||||||| ||||||||| ||| |||||||| ||||||| |||||||||| |||||||||| | |||  |||||||||    
T  1903411 aacttgtttaaaagaagcatgagtacgcaactaacc-aacctatgcaaacataatcataacctcatcatgtcttaaccacacagtattttagctca 1903317  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 1879636 - 1879539
Alignment:
Q  8 aacttgtttaaaagaagcttgagtacacaactaaccaaacttatgcaaatataatcagaacctcatcacgtcttaaccataaagtggtttagctcatg 105  Q
    |||||||||||||||||| |||| || ||| ||| ||| |||||||||| ||||||| ||||||||   ||||||| || |||||| |||||||||||    
T  1879636 aacttgtttaaaagaagcatgagcacgcaattaatcaaccttatgcaaacataatcataacctcattgtgtcttaagcacaaagtgttttagctcatg 1879539  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 207
Target Start/End: Complemental strand, 32347933 - 32347838
Alignment:
Q  112 tctcgaaattgtggttgggttacttattcaacaaaggaagatcgcgagagggtgtttgactttgtggttttgcataatataatatttgttgtcact 207  Q
    |||||||||||||| |||||||||||||| | ||||  | ||   | ||| ||  |||||||||||||||||||||||||||||| | ||||||||    
T  32347933 tctcgaaattgtgggtgggttacttattcgataaagagacatttagggagagttgttgactttgtggttttgcataatataatatatattgtcact 32347838  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 106
Target Start/End: Complemental strand, 29890779 - 29890673
Alignment:
Q  4 atacaacttgtttaaaagaagcttgagtaca--caactaaccaaacttatg-caaatataatcagaacctcatcacgtcttaaccataaagt-ggtttag 99  Q
    |||||||||||||||||  ||||| ||||||  |||||||||||||||||| |||| ||||||| |||||||||| || ||||| | ||||| |||||||    
T  29890779 atacaacttgtttaaaatgagctttagtacatacaactaaccaaacttatgccaaacataatcataacctcatcatgtattaacgacaaagtaggtttag 29890680  T
Q  100 ctcatga 106  Q
    |||||||    
T  29890679 ctcatga 29890673  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 14963905 - 14964004
Alignment:
Q  112 tctcgaaattgtggttgggttacttattcaacaaaggaagatcgcgagagggtgtttgactttgtggttttgcataatataatatttgttgtcactaaca 211  Q
    |||| |||||||| |||||||||||||||||||| || | |    | ||||||  |||||||||||||||||||||||||||||| |||| |||||||||    
T  14963905 tctcaaaattgtgattgggttacttattcaacaatgggaaactcagggagggttgttgactttgtggttttgcataatataatatatgttatcactaaca 14964004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 25030497 - 25030609
Alignment:
Q  1 tttatacaacttgtttaaaagaagcttgagtacacaactaaccaaacttatgcaaatataatcagaacctcatcacgtcttaacca-taaagtggtttag 99  Q
    ||||||||||||||||||||||||||| | ||   |||| ||||||||| ||||||||||||   ||||    || |||||||||| ||||| ||||||     
T  25030497 tttatacaacttgtttaaaagaagcttaaatatgtaacttaccaaacttttgcaaatataattgtaaccctgccatgtcttaaccactaaaggggtttat 25030596  T
Q  100 ctcatgatgaact 112  Q
    |||||||||||||    
T  25030597 ctcatgatgaact 25030609  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 39193573 - 39193517
Alignment:
Q  167 ttgactttgtggttttgcataatataatatttgttgtcactaacaaagccaacatag 223  Q
    |||||||||| |||||||| ||||  ||||  |||||||||||||||||||||||||    
T  39193573 ttgactttgttgttttgcacaataccatatacgttgtcactaacaaagccaacatag 39193517  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 41507757 - 41507865
Alignment:
Q  1 tttatacaacttgtttaaaagaagcttgagtacacaactaaccaaacttatgcaaatataatcagaacctcatcacgtcttaaccataaagtggtttagc 100  Q
    |||||| ||||| ||||||| ||| || ||||   ||||||||||||||| | ||| || |||| |||||||||| || |||||||  ||| || |||||    
T  41507757 tttataaaacttatttaaaataagtttaagtaggtaactaaccaaacttacgtaaacatgatcaaaacctcatcatgtattaaccaccaagcgggttagc 41507856  T
Q  101 tcatgatga 109  Q
    |||||||||    
T  41507857 tcatgatga 41507865  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 8676419 - 8676346
Alignment:
Q  36 aactaaccaaacttatgcaaatataatcagaacctcatcacgtcttaaccataaa-gtggtttagctcatgatg 108  Q
    |||||| ||||||  |||||| ||| ||| ||| |||||| |||| ||||||||| ||||||||||||||||||    
T  8676419 aactaaacaaactcgtgcaaacatattcataacatcatcatgtctcaaccataaaagtggtttagctcatgatg 8676346  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 50663064 - 50663023
Alignment:
Q  66 aacctcatcacgtcttaaccataaagtggtttagctcatgat 107  Q
    |||||||||| |||| ||||| ||||||||||||||||||||    
T  50663064 aacctcatcatgtctcaaccacaaagtggtttagctcatgat 50663023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 5676843 - 5676908
Alignment:
Q  44 aaacttatgcaaatataatcagaacctcatcacgtcttaaccataaagtggtttagctcatgatga 109  Q
    ||||||||||||| ||||||| ||| |||||| |||||||||| |||| |||||||||||||||||    
T  5676843 aaacttatgcaaacataatcataacatcatcatgtcttaaccaaaaaggggtttagctcatgatga 5676908  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 223
Target Start/End: Original strand, 31266390 - 31266501
Alignment:
Q  112 tctcgaaattgtggttgggttacttattcaacaaaggaagatcgcgagagggtgtttgactttgtggttttgcataatataatatttgttgtcactaaca 211  Q
    |||||||||||||||||| ||| |||    ||||||||| ||   | |||| | || ||||||| ||| |||||||||||||||| |||||||||| |||    
T  31266390 tctcgaaattgtggttggattagttacatgacaaaggaaaattatgggaggcttttggactttgcggtcttgcataatataatatatgttgtcactcaca 31266489  T
Q  212 aagccaacatag 223  Q
    | ||||||||||    
T  31266490 aggccaacatag 31266501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 43156719 - 43156663
Alignment:
Q  167 ttgactttgtggttttgcataatataatatttgttgtcactaacaaagccaacatag 223  Q
    ||||||||||| ||||||||| |||||||| |||  ||||||| || ||||||||||    
T  43156719 ttgactttgtgcttttgcatagtataatatatgtcatcactaataaggccaacatag 43156663  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 33650593 - 33650659
Alignment:
Q  44 aaacttatgcaaatataatcagaacctcatcacgtcttaacca-taaagtggtttagctcatgatga 109  Q
    ||||||||||||| |||| || |||||| ||| |||| ||||| ||||| |||||||||||||||||    
T  33650593 aaacttatgcaaacataaccataacctcgtcatgtctcaaccactaaaggggtttagctcatgatga 33650659  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 21639435 - 21639496
Alignment:
Q  49 tatgcaaatataatcagaacctcatcacgtcttaacca-taaagtggtttagctcatgatga 109  Q
    |||||||||||||||| |||||||||| |||| ||||| ||||| | ||||||| |||||||    
T  21639435 tatgcaaatataatcataacctcatcatgtctaaaccactaaagagatttagcttatgatga 21639496  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 55773577 - 55773610
Alignment:
Q  112 tctcgaaattgtggttgggttacttattcaacaa 145  Q
    |||||||||| |||||||||||||||||||||||    
T  55773577 tctcgaaattttggttgggttacttattcaacaa 55773610  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 55837788 - 55837821
Alignment:
Q  112 tctcgaaattgtggttgggttacttattcaacaa 145  Q
    |||||||||| |||||||||||||||||||||||    
T  55837788 tctcgaaattttggttgggttacttattcaacaa 55837821  T

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