View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11555_low_3 (Length: 541)
Name: NF11555_low_3
Description: NF11555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11555_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Original strand, 23869073 - 23869593
Alignment:
| Q |
1 |
taggaactcttagatattttaattttttgctttcgaatttgtagtgaagtagtaattggatctggttggtttttctgtgtatcataatgatggaatgaat |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
23869073 |
taggaactcttagatattttaaatttttgctttcgaatttgtagtgaagtagtaattggatctggttggtctttctgtgtatcataatgatggaatgaat |
23869172 |
T |
|
| Q |
101 |
gatattttgactacaaaaaatttgcatggttcaatttgcttagtttcttggttgtttaatttgtgtaagaaagcatgaagcgctatttaaaccaagaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
23869173 |
gatattttgactacaaaaaatttgcatggttcaatttgcttagtttcttggttgtttaatttgtatgagaaagcatgaagcgctatttaaaccaagaaag |
23869272 |
T |
|
| Q |
201 |
taaaaccatcttatatcattatgccaagaactttatcacaagnnnnnnnnngtttt--gaacaattgctatgggttttactgagtaatgatatataattg |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
23869273 |
taaaaccatcttatatcattatgccaagaactttatcacaagttttttttttttttttgaacaattgctacgggttttactgagtaatgatatatagttg |
23869372 |
T |
|
| Q |
299 |
atcatgttttgttttagaatgaataatgaattttaattgacttttaatgactaacaatggactggtttttaattcttactgttaagactttccaaaattt |
398 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23869373 |
atcatgttttgttttagaat----aatgaattttaattgacttttaatgacaaacaatggactggtttttaattcttactgtta-gactttccaaaattt |
23869467 |
T |
|
| Q |
399 |
ctatctaacctagtgtttttagaattgtatttgtaagtacaggcctgtctattaggtaccgtgtattgcctattgcattcttaacattcgtgtatgaaag |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23869468 |
ctatctaacctagtgtttttagaattgtatttgtaagtacaggcctgtctattaggta-cgtgtattgcctattgcattcttaacattcgtgtatgaaag |
23869566 |
T |
|
| Q |
499 |
ttctgaggtgtgagctagagagaaaat |
525 |
Q |
| |
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||||||||||||||||||||||||||| |
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|
| T |
23869567 |
ttctgaggtgtgagctagagagaaaat |
23869593 |
T |
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