View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11555_low_4 (Length: 482)
Name: NF11555_low_4
Description: NF11555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11555_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 5 - 467
Target Start/End: Complemental strand, 48222236 - 48221778
Alignment:
| Q |
5 |
cagatcacactctttccctaaaagattcacatatgtggcacattcttacttgatctaggagctcaaatccagcatcctcatgccgtcaccaataactctt |
104 |
Q |
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| T |
48222236 |
cagatcacactctttccctaaaagattcacatatgtggcacattcttacttgatctaggagctcaaatccagcatcctcatgccgtcaccaataactctt |
48222137 |
T |
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| Q |
105 |
aaggccgaagatctctaatccagttgaattatattaagtttgactttctctctaaaaggg-aatgatatatgtcccaaagaatttacccacaaatacata |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
48222136 |
aaggccgaagatctctaatccagttgaattatattaagtttgactttctctctaaaagggaaatgatatatgtcccaaagaatttacccacaaattcata |
48222037 |
T |
|
| Q |
204 |
gcaaaggcaatatcaatcaacagtcctacatatatgccaatgctatcatgaatcataagaaagatggtnnnnnnnntctaatgacacagctcataatgaa |
303 |
Q |
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| T |
48222036 |
gcgaaggcaatatcaatca--ggtggcaca---atgccaatgctatcatgaatcataagaaagatggtaaaaaaaatctaatggcacagctcataatgaa |
48221942 |
T |
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| Q |
304 |
aatgagagtaagtacttcaaagcatgatataaagtcaacagtcctactaatccaaacttttgtagaatatggtggttctttctattcaatagaagcaaaa |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
48221941 |
aatgagagtaagtacttcaaagcatgatataaagtcaacagtcctactaatccaaacttttgtggaatatggtggttctttctattcaatagaggcaaaa |
48221842 |
T |
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| Q |
404 |
taggaacaccaatgctaggtgtaatttgttgaagacagagaaaatatccaatcatattgttctt |
467 |
Q |
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| T |
48221841 |
taggaacaccaatgctaggtgtaatttgttgaagacagagaaaatatccaatcatattgttctt |
48221778 |
T |
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