View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11555_low_5 (Length: 449)
Name: NF11555_low_5
Description: NF11555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11555_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 49040274 - 49039841
Alignment:
| Q |
1 |
tctgccacaccctatccccctttgaaactctacccttggcctctacgtatgctaactcataccaaagtgaactacttgaagtgttaccaaagcggtgtaa |
100 |
Q |
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| T |
49040274 |
tctgccacaccctatccccctttgaaactctacccttggcctctacgtatgctaactcataccaaagtgaactacttgaagtgttaccaaagcgatgtaa |
49040175 |
T |
|
| Q |
101 |
tgtggaacgagatggctccatatgccactcacttagttctagattattctgcatagcatccaacactgatctcccacctccatggatgcagaaatgctca |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
49040174 |
tgtggaacaagatggctccatatgccactcacttagttctatattattctgcatagcatccaacactgatctcccacctgcatggatgcagaaatgctca |
49040075 |
T |
|
| Q |
201 |
aatgccaatttgaaattcggtacataatttgatgacttctttctaaacaacgatatcataaacattaattgctccgaaaatggcaaaaccaatggaccta |
300 |
Q |
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|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49040074 |
aaagccaatttgaaattcggtacatagtttgatgacttctttctaaacaacgatatcataaacattaattgctccgaaaatggcaaaaccaatggaccta |
49039975 |
T |
|
| Q |
301 |
actcagttatgttatttttcaaggcttctcctgccactttcattagctccttcgatagagacacacctgtgtaccctgtttcgtcctctttttggaacac |
400 |
Q |
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| T |
49039974 |
actcagttatgttatttttcaaggcttctcctgccactttcattagctccttcgatagagacacacctgtgtaccctgtttcgtcctctttttggaacac |
49039875 |
T |
|
| Q |
401 |
acaattgtagctcttgtcattggctcctaaatga |
434 |
Q |
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| T |
49039874 |
acaattgtagctcttgtcattggctcctgaatga |
49039841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 19671772 - 19671813
Alignment:
| Q |
48 |
tatgctaactcataccaaagtgaactacttgaagtgttacca |
89 |
Q |
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| T |
19671772 |
tatgccaactcataccaaacagaactacttgaagtgttacca |
19671813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 19742892 - 19742933
Alignment:
| Q |
48 |
tatgctaactcataccaaagtgaactacttgaagtgttacca |
89 |
Q |
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||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
19742892 |
tatgccaactcataccaaacagaactacttgaagtgttacca |
19742933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 19797196 - 19797155
Alignment:
| Q |
48 |
tatgctaactcataccaaagtgaactacttgaagtgttacca |
89 |
Q |
| |
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||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
19797196 |
tatgccaactcataccaaacagaactacttgaagtgttacca |
19797155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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