View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11556_high_2 (Length: 441)
Name: NF11556_high_2
Description: NF11556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11556_high_2 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 183 - 441
Target Start/End: Complemental strand, 7446360 - 7446102
Alignment:
| Q |
183 |
gaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaannnnnnnaagactgaagtactcttcttcaagttt |
282 |
Q |
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| T |
7446360 |
gaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaatttttttaagactgaagtactcttcttcaagttt |
7446261 |
T |
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| Q |
283 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
382 |
Q |
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| T |
7446260 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
7446161 |
T |
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| Q |
383 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaattt |
441 |
Q |
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| T |
7446160 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaattt |
7446102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 183 - 441
Target Start/End: Complemental strand, 7461304 - 7461046
Alignment:
| Q |
183 |
gaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaannnnnnnaagactgaagtactcttcttcaagttt |
282 |
Q |
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||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7461304 |
gaagaggaagaaagaggtataccttggtttcaaggagacacttctcaagaatggtggattcatgattttttttaagactgaagtactcttcttcaagttt |
7461205 |
T |
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| Q |
283 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
382 |
Q |
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| T |
7461204 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
7461105 |
T |
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| Q |
383 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaattt |
441 |
Q |
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| T |
7461104 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaattt |
7461046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 7446520 - 7446419
Alignment:
| Q |
20 |
acgttactgctgttgtgttgagacaaataaaaacaaaacactatagtaatataatattgttggaattaaaaaatttatgtctagttataatccaatcaac |
119 |
Q |
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| T |
7446520 |
acgttactggtgttgtgttgagacaaataaaaacaaaacactatagtaatataatattgttggaattaaaaaatttatgtcaagttataatccaatccac |
7446421 |
T |
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| Q |
120 |
tg |
121 |
Q |
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|| |
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| T |
7446420 |
tg |
7446419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 7461508 - 7461445
Alignment:
| Q |
20 |
acgttactgctgttgtgttgagacaaataaaaacaaaacactatagtaatataatattgttgga |
83 |
Q |
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| T |
7461508 |
acgttactagtgttgtgttgatacaaataaaaacaaaacactatagtaatataatattgttgga |
7461445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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