View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11556_low_1 (Length: 493)

Name: NF11556_low_1
Description: NF11556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11556_low_1
NF11556_low_1
[»] chr5 (23 HSPs)
chr5 (214-493)||(8677383-8677662)
chr5 (20-204)||(8643193-8643377)
chr5 (56-204)||(8635802-8635951)
chr5 (56-210)||(8677197-8677350)
chr5 (312-454)||(8643719-8643860)
chr5 (345-453)||(8636291-8636398)
chr5 (216-315)||(8643600-8643699)
chr5 (378-441)||(8534701-8534764)
chr5 (449-490)||(8644025-8644066)
chr5 (159-203)||(8545365-8545409)
chr5 (376-443)||(8640679-8640746)
chr5 (391-451)||(1601056-1601116)
chr5 (449-493)||(8535314-8535358)
chr5 (453-493)||(9074969-9075009)
chr5 (458-493)||(1600529-1600564)
chr5 (376-441)||(9002548-9002613)
chr5 (216-316)||(8636183-8636283)
chr5 (378-441)||(8528136-8528199)
chr5 (378-443)||(8548783-8548848)
chr5 (460-493)||(8636691-8636724)
chr5 (148-192)||(1601349-1601392)
chr5 (148-203)||(8527663-8527719)
chr5 (159-203)||(9075532-9075576)
[»] chr8 (2 HSPs)
chr8 (73-203)||(44438680-44438811)
chr8 (216-309)||(44438360-44438454)
[»] chr4 (1 HSPs)
chr4 (378-441)||(9442297-9442360)
[»] chr1 (1 HSPs)
chr1 (376-421)||(5130067-5130112)
[»] chr7 (1 HSPs)
chr7 (385-441)||(48362528-48362584)


Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 214 - 493
Target Start/End: Original strand, 8677383 - 8677662
Alignment:
Q  214 ttcctaaaattgtagtaaggacggatcagaatattcccatcaaagtgaaaatagacgtacttttcttcatatacgggctcatcaccaaattcttcaccat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||    
T  8677383 ttcctaaaattgtagtaaggacggatcagaatattcccatcaaagtgaaaagagacgtacttttcttcatatatgggctcgtcaccaaattcttcaccat 8677482  T
Q  314 caagtcaccataagatgatgaagaacgtgtaattccaaatctcaatcaaatttgctgtgacgaggaaagaacttcattttcttcccgcaattcaacattt 413  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  8677483 caagtcaccataagatgatgaagaatgtgtaattccaaatctcaatcaaatttgttgtgacaaggaaagaacttcattttcttcccgcaattcaacattt 8677582  T
Q  414 gcacacctatatcaattaaaacaatattagcgaataatcttagcagctacattcttaccttgagtggatattcagcacct 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8677583 gcacacctatatcaattaaaacaatattagcgaataatcttagcagctacattcttaccttgagtggatattcagcacct 8677662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 8643193 - 8643377
Alignment:
Q  20 gatgaagtaaaagagatataggtgattaggaacttaaatgaaatagtttagcaataatcattgtctttttctaaaccattgccaacaagataacaagtca 119  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8643193 gatgaagtaaaagagatatcggtgattaggaactaaaatgaaatagtttagcaataatcattgtctttttctaaaccattgccaacaagataacaagtca 8643292  T
Q  120 atatagtaaaaccatagatgataactactgaacatcttaattaaagtttacaaaaaagacatcatttgcatccgaaaatgagata 204  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  8643293 atatagtaaaaccatagatgataattactgaacatctgaattaaagtttacaaaaaagacatcatttgcatcctaaaatgagata 8643377  T

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Target: chr5; HSP #3
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 56 - 204
Target Start/End: Original strand, 8635802 - 8635951
Alignment:
Q  56 aatgaaatagtttagcaataatcattgtctttttctaaaccattgccaacaagataacaagtcaatatagtaaaaccatagatgataactactgaacatc 155  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8635802 aatgaaatagttgagcaacaatcattgtctttttctaaaccattgccaacaagataacaagtcaatctagtaaaaccatagatgataactactgaacatc 8635901  T
Q  156 ttaattaaagtttac-aaaaaagacatcatttgcatccgaaaatgagata 204  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  8635902 ttaattaaagtttacaaaaaaagacatcatttgcatcctaaaatgagata 8635951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 56 - 210
Target Start/End: Original strand, 8677197 - 8677350
Alignment:
Q  56 aatgaaatagtttagcaataatcattgtctttttctaaaccattgccaacaagataacaagtcaatatagtaaaaccatagatgataactactgaacatc 155  Q
    |||||||||||| |||||||||||||||||||||| |||| || ||||||||||||||||||||||  | |  |||||||||||||||||||||||| ||    
T  8677197 aatgaaatagttgagcaataatcattgtctttttccaaacaat-gccaacaagataacaagtcaatccaatgcaaccatagatgataactactgaacgtc 8677295  T
Q  156 ttaattaaagtttacaaaaaagacatcatttgcatccgaaaatgagataaaataa 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8677296 ttaattaaagtttacaaaaaagacatcatttgcatccgaaaatgagataaaataa 8677350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 312 - 454
Target Start/End: Original strand, 8643719 - 8643860
Alignment:
Q  312 atcaagtcaccataagatgatgaagaacgtgtaattccaaatctcaatcaaatttgctgtgacgaggaaagaacttcattttcttcccgcaattcaacat 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  || || | |||||| ||||||||||||||||||||||   |||||  ||||    
T  8643719 atcaagtcaccataagatgatgaagaacgtgtaattccaaatctcaaagaactt-gttgtgacaaggaaagaacttcattttcttcttccaatttgacat 8643817  T
Q  412 ttgcacacctatatcaattaaaacaatattagcgaataatctt 454  Q
    |||||||||||||||||||||||||||||||  ||||||||||    
T  8643818 ttgcacacctatatcaattaaaacaatattaaggaataatctt 8643860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 345 - 453
Target Start/End: Original strand, 8636291 - 8636398
Alignment:
Q  345 attccaaatctcaatcaaatttgctgtgacgaggaaagaacttcattttcttcccgcaattcaacatttgcacacctatatcaattaaaacaatattagc 444  Q
    |||||||||||||| ||  |||| || ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||     
T  8636291 attccaaatctcaaacag-tttgttgagacaaggaaagaacttcattttcttccggcaattcaacatttgcacacctatatcaatcaaaacaatatgagg 8636389  T
Q  445 gaataatct 453  Q
    |||||||||    
T  8636390 gaataatct 8636398  T

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Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 216 - 315
Target Start/End: Original strand, 8643600 - 8643699
Alignment:
Q  216 cctaaaattgtagtaaggacggatcagaatattcccatcaaagtgaaaatagacgtacttttcttcatatacgggctcatcaccaaattcttcaccatca 315  Q
    ||||||||||||||| | | || ||||||||| | |||||| ||||||| ||||||||||||| | |||||| ||||||||| | |||||||||||||||    
T  8643600 cctaaaattgtagtatgcaagggtcagaatatcctcatcaatgtgaaaagagacgtacttttcataatatacaggctcatcatcgaattcttcaccatca 8643699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 378 - 441
Target Start/End: Original strand, 8534701 - 8534764
Alignment:
Q  378 gaaagaacttcattttcttcccgcaattcaacatttgcacacctatatcaattaaaacaatatt 441  Q
    ||||||||||| |||||||||||||||| ||  ||||||||||||||| |||||||||||||||    
T  8534701 gaaagaacttccttttcttcccgcaatttaaactttgcacacctatataaattaaaacaatatt 8534764  T

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Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 449 - 490
Target Start/End: Original strand, 8644025 - 8644066
Alignment:
Q  449 aatcttagcagctacattcttaccttgagtggatattcagca 490  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8644025 aatcttagcagctacattcttaccttgagtggatattcagca 8644066  T

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Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 8545409 - 8545365
Alignment:
Q  159 attaaagtttacaaaaaagacatcatttgcatccgaaaatgagat 203  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  8545409 attaaagtttacaaaaaagacatcatttgcatcctaaaatgagat 8545365  T

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Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 8640679 - 8640746
Alignment:
Q  376 aggaaagaacttcattttcttcccgcaattcaacatttgcacacctatatcaattaaaacaatattag 443  Q
    |||||| ||||||||||||||| | ||||| ||  ||||||||||||||| |||||||||||||||||    
T  8640679 aggaaaaaacttcattttcttctcccaatttaaactttgcacacctatataaattaaaacaatattag 8640746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 451
Target Start/End: Complemental strand, 1601116 - 1601056
Alignment:
Q  391 tttcttcccgcaattcaacatttgcacacctatatcaattaaaacaatattagcgaataat 451  Q
    ||||||||||||||| ||  ||||||||||||||| ||||||||||||||| | |||||||    
T  1601116 tttcttcccgcaatttaaactttgcacacctatataaattaaaacaatatttgggaataat 1601056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 493
Target Start/End: Original strand, 8535314 - 8535358
Alignment:
Q  449 aatcttagcagctacattcttaccttgagtggatattcagcacct 493  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||    
T  8535314 aatcttagaagctacattcttaccttgagtggatattcagaacct 8535358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 453 - 493
Target Start/End: Complemental strand, 9075009 - 9074969
Alignment:
Q  453 ttagcagctacattcttaccttgagtggatattcagcacct 493  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  9075009 ttagaagctacattcttaccttgagtggatattcagcacct 9074969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 458 - 493
Target Start/End: Complemental strand, 1600564 - 1600529
Alignment:
Q  458 agctacattcttaccttgagtggatattcagcacct 493  Q
    ||||||||||||||||||||||||||||||||||||    
T  1600564 agctacattcttaccttgagtggatattcagcacct 1600529  T

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Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 376 - 441
Target Start/End: Original strand, 9002548 - 9002613
Alignment:
Q  376 aggaaagaacttcattttcttcccgcaattcaacatttgcacacctatatcaattaaaacaatatt 441  Q
    |||||| ||||||| ||||||||| ||||| ||  ||||||||||||||| ||||| |||||||||    
T  9002548 aggaaaaaacttcactttcttccctcaatttaaactttgcacacctatataaattacaacaatatt 9002613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 316
Target Start/End: Original strand, 8636183 - 8636283
Alignment:
Q  216 cctaaaattgtagtaaggacggatcagaatattcccatcaaagtgaaaatagacgtacttttcttcatatacgggctcatcaccaaattcttcaccatca 315  Q
    |||||||||||| |||| | || | | | ||| |||||||| ||||||| ||||| |||| |||| | ||| ||||||||| || |||||||||||||||    
T  8636183 cctaaaattgtattaagcaagggttacagtatccccatcaatgtgaaaagagacgcacttctcttaagatatgggctcatcgccgaattcttcaccatca 8636282  T
Q  316 a 316  Q
    |    
T  8636283 a 8636283  T

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Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 441
Target Start/End: Original strand, 8528136 - 8528199
Alignment:
Q  378 gaaagaacttcattttcttcccgcaattcaacatttgcacacctatatcaattaaaacaatatt 441  Q
    |||||||| || |||||| ||||||||| ||  ||||||||||||||  |||||||||||||||    
T  8528136 gaaagaacctccttttctccccgcaatttaaactttgcacacctatagaaattaaaacaatatt 8528199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 443
Target Start/End: Complemental strand, 8548848 - 8548783
Alignment:
Q  378 gaaagaacttcattttcttcccgcaattcaacatttgcacacctatatcaattaaaacaatattag 443  Q
    |||| |||||| ||||||||| | |||| ||  ||| ||||||||||| |||||||||||||||||    
T  8548848 gaaataacttctttttcttcctgaaatttaaactttacacacctatataaattaaaacaatattag 8548783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 493
Target Start/End: Original strand, 8636691 - 8636724
Alignment:
Q  460 ctacattcttaccttgagtggatattcagcacct 493  Q
    ||||||||| ||||||||||||||||||||||||    
T  8636691 ctacattctaaccttgagtggatattcagcacct 8636724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 1601392 - 1601349
Alignment:
Q  148 tgaacatcttaattaaagtttacaaaaaagacatcatttgcatcc 192  Q
    |||||||||  ||||||||||||||||| ||||||||||||||||    
T  1601392 tgaacatctagattaaagtttacaaaaa-gacatcatttgcatcc 1601349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 8527663 - 8527719
Alignment:
Q  148 tgaacatcttaattaaagtttacaaaa-aagacatcatttgcatccgaaaatgagat 203  Q
    |||||||||  |||||| ||||||||| |||||||||||||||||  ||||||||||    
T  8527663 tgaacatctagattaaattttacaaaaaaagacatcatttgcatcttaaaatgagat 8527719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 9075576 - 9075532
Alignment:
Q  159 attaaagtttacaaaaaagacatcatttgcatccgaaaatgagat 203  Q
    ||||||||| ||||||||| |||||||||||||| |||| |||||    
T  9075576 attaaagttaacaaaaaagccatcatttgcatcctaaaacgagat 9075532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 203
Target Start/End: Complemental strand, 44438811 - 44438680
Alignment:
Q  73 ataatcattgtctttttctaaaccattgccaacaagataac-aagtcaatatagtaaaaccatagatgataactactgaacatcttaattaaa-gtttac 170  Q
    |||||||||| |||||||||||||| | ||| ||||||||| ||| || | | |||||||||| ||| || ||   ||||||| || |||||| |||||     
T  44438811 ataatcattgactttttctaaaccaat-ccatcaagataaccaagccagtctcgtaaaaccatggataatgaccgatgaacattttgattaaaagtttag 44438713  T
Q  171 aaaaaagacatcatttgcatccgaaaatgagat 203  Q
    |||||||||||||||||| ||| ||||||||||    
T  44438712 aaaaaagacatcatttgcctcctaaaatgagat 44438680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 309
Target Start/End: Complemental strand, 44438454 - 44438360
Alignment:
Q  216 cctaaaattgtagtaaggacggatcagaatattcccatcaaagtgaaaata---gacgtacttttcttcatatacgggctcatcaccaaattcttca 309  Q
    ||||||||||||||||| | || ||| ||||  || ||||| | |||||||   |||||||||||||||||| | ||||||||| ||||||||||||    
T  44438454 cctaaaattgtagtaagcaagggtcaaaata--ccgatcaatgcgaaaatagacgacgtacttttcttcataaatgggctcatcgccaaattcttca 44438360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 441
Target Start/End: Original strand, 9442297 - 9442360
Alignment:
Q  378 gaaagaacttcattttcttcccgcaattcaacatttgcacacctatatcaattaaaacaatatt 441  Q
    |||||||| || |||||| ||||||||| ||  ||||||||||||||  |||||||||||||||    
T  9442297 gaaagaacctccttttctccccgcaatttaaactttgcacacctatagaaattaaaacaatatt 9442360  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 421
Target Start/End: Original strand, 5130067 - 5130112
Alignment:
Q  376 aggaaagaacttcattttcttcccgcaattcaacatttgcacacct 421  Q
    |||||| ||||||||||||||||||||||| ||  |||||||||||    
T  5130067 aggaaaaaacttcattttcttcccgcaatttaaactttgcacacct 5130112  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 441
Target Start/End: Complemental strand, 48362584 - 48362528
Alignment:
Q  385 cttcattttcttcccgcaattcaacatttgcacacctatatcaattaaaacaatatt 441  Q
    |||| ||||||||| |||||| ||  ||||||||||||||| ||||||| |||||||    
T  48362584 cttccttttcttcctgcaatttaaactttgcacacctatataaattaaaccaatatt 48362528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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