View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11556_low_3 (Length: 376)
Name: NF11556_low_3
Description: NF11556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11556_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 20 - 357
Target Start/End: Complemental strand, 40845317 - 40844981
Alignment:
| Q |
20 |
tagttctcactgataaataatcatcttgcaatatatacttttttctttctcttttgtaggcatcaaatattatatttgtagaccaacccattggatcagg |
119 |
Q |
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| T |
40845317 |
tagttctcactgatacataatcatcttgcaacatatacttttttctttctcttttgtaggcatcaaatattatatttgtagaccaacccattggatcagg |
40845218 |
T |
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| Q |
120 |
tttcagctacaccaccgatgttagtgatgatattcgccatgatgaagacagtattagcaacgatttgtatgacttcttgcaggtaacttgatttgttcag |
219 |
Q |
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| T |
40845217 |
tttcagctacaccaccgatgttagtgatgatattcgccatgatgaagacagtattagcaacgatttgtatgacttcttgcaggtaacttgatttgttcag |
40845118 |
T |
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| Q |
220 |
taccttattaatttgattaatcacttgaattaagtggttaaacnnnnnnnataacgagaaattaagtggttaaacttgattcatagttagttagtagtac |
319 |
Q |
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| T |
40845117 |
taccttattaa-ttgattaatcacttgaattaagtggttaaactttttttataacgagaaattaagtggttaaacttgattcatcgttagttagtagtac |
40845019 |
T |
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| Q |
320 |
ttatatttaattttaaaattcaaagacgacattacata |
357 |
Q |
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| T |
40845018 |
ttatatttaattttaaaattcaaagacgacattacata |
40844981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 40840915 - 40840724
Alignment:
| Q |
20 |
tagttctcactgataaataatcatcttgcaatatatacttttttctttctcttttgtaggcatcaaatattatatttgtagaccaacccattggatcagg |
119 |
Q |
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| T |
40840915 |
tagttctcactgatacataatcatcttgcaatatatacttttttctttctcttttgtaggcatcaaatattatatttgtagaccaacccattggatcagg |
40840816 |
T |
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| Q |
120 |
tttcagctacaccaccgatgttagtgatgatattcgccatgatgaagacagtattagcaacgatttgtatgacttcttgcaggtaacttgatttgtt |
216 |
Q |
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| T |
40840815 |
tttcagctataccactgatgatagtgacta---tcgacatgatgaagacggtgttagcaatgatctatat--tttcttgcaggtaacttgatttgtt |
40840724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 72 - 216
Target Start/End: Complemental strand, 40851306 - 40851165
Alignment:
| Q |
72 |
tttgtaggcatcaaatattatatttgtagaccaacccattggatcaggtttcagctacaccaccgatgttagtgatgatattcgccatgatgaagacagt |
171 |
Q |
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| T |
40851306 |
tttgtaggcatcaaatattatatttgtagaccaacccactggaacaggtttcagctataccactgatgatagtgacg---ttcgacatgatgaagacggt |
40851210 |
T |
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| Q |
172 |
attagcaacgatttgtatgacttcttgcaggtaacttgatttgtt |
216 |
Q |
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| T |
40851209 |
gttagcaatgatctatatgatttcttgcaggtaacttgatctgtt |
40851165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 21149972 - 21150073
Alignment:
| Q |
100 |
gaccaacccattggatcaggtttcagctacaccaccgatgttagtgatgatattcgccatgatgaagacagtattagcaacgatttgtatgacttcttgc |
199 |
Q |
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|||||||||||||| |||||||||||||||| | |||| ||||||| ||||| |||||| || |||||||||||||| ||||| |||||||||| |
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| T |
21149972 |
gaccaacccattgggacaggtttcagctacacttctgatgatagtgat---attcgacatgatcaaactagtattagcaacgacttgtacgacttcttgc |
21150068 |
T |
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| Q |
200 |
aggta |
204 |
Q |
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||||| |
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| T |
21150069 |
aggta |
21150073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 21145028 - 21145070
Alignment:
| Q |
71 |
ttttgtaggcatcaaatattatatttgtagaccaacccattgg |
113 |
Q |
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| T |
21145028 |
ttttgtaggcatcaaatattctatttgttgaccaacccattgg |
21145070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 21114899 - 21114954
Alignment:
| Q |
71 |
ttttgtaggcatcaaatattatatttgtagaccaacccattggatcaggtttcagc |
126 |
Q |
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|||||||||||||||||||| | ||||| || ||||||||||| ||||||||||| |
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| T |
21114899 |
ttttgtaggcatcaaatattctttttgttgatcaacccattgggacaggtttcagc |
21114954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 21124938 - 21124980
Alignment:
| Q |
71 |
ttttgtaggcatcaaatattatatttgtagaccaacccattgg |
113 |
Q |
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| T |
21124938 |
ttttgtaggcatcaaatattctttttgttgaccaacccattgg |
21124980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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