View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_high_11 (Length: 336)
Name: NF11557A_high_11
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_high_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 336
Target Start/End: Original strand, 7930680 - 7931005
Alignment:
| Q |
11 |
catagacaagcgcccaggtaagaaaggatcctatcattctgtatccctgaaattaaaaatcaaagataacctgttaatccaaagtccaaacaggatatac |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7930680 |
catacacaagcgcccaggtaagaaaggatcctatcattctgtatccctgaaattaaaaatcaaagataacctgttaatccaaagtccaaacaggatatac |
7930779 |
T |
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| Q |
111 |
caaagcatccaatccaagcaactgaaactaaagaacaatgatactgttaatataattaagcttgcaaattctaattcataactaaaatagttctaattcc |
210 |
Q |
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| T |
7930780 |
caaagcatccaatccaagcaactgaaactaaagaacaatgatactgttaatataattaagcttgcaaattctaattcataactaaaatagttctaattcc |
7930879 |
T |
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| Q |
211 |
ctgctcactaacgttttagatatgatactatgatactatcaaatggattgtatcataaactattttacattttgaatgaattgattttacttaaaagtga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7930880 |
ctgctcactaacgttttagatatgatactatgatactatccaatggattgtatcataaactattttacattttgaatgaattgattttacttaaaagtga |
7930979 |
T |
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| Q |
311 |
gttgtgatttatgattgaatacattt |
336 |
Q |
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| T |
7930980 |
gttgtgatttatgattgaatacattt |
7931005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 314
Target Start/End: Original strand, 2234149 - 2234184
Alignment:
| Q |
279 |
attttgaatgaattgattttacttaaaagtgagttg |
314 |
Q |
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| T |
2234149 |
attttgaatgaattgattttacttaaaagtgagttg |
2234184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 314
Target Start/End: Original strand, 2778345 - 2778380
Alignment:
| Q |
279 |
attttgaatgaattgattttacttaaaagtgagttg |
314 |
Q |
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||||||||| |||||||||||||||||||||||||| |
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| T |
2778345 |
attttgaataaattgattttacttaaaagtgagttg |
2778380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 314
Target Start/End: Original strand, 36270836 - 36270871
Alignment:
| Q |
279 |
attttgaatgaattgattttacttaaaagtgagttg |
314 |
Q |
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||||||||||||||||||||| |||||||||||||| |
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| T |
36270836 |
attttgaatgaattgattttaattaaaagtgagttg |
36270871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 314
Target Start/End: Complemental strand, 2206301 - 2206266
Alignment:
| Q |
279 |
attttgaatgaattgattttacttaaaagtgagttg |
314 |
Q |
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||||||||||||||||||||| |||||||||||||| |
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| T |
2206301 |
attttgaatgaattgattttatttaaaagtgagttg |
2206266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 314
Target Start/End: Complemental strand, 39438943 - 39438908
Alignment:
| Q |
279 |
attttgaatgaattgattttacttaaaagtgagttg |
314 |
Q |
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|||||||||||||| ||||||||||||||||||||| |
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| T |
39438943 |
attttgaatgaattaattttacttaaaagtgagttg |
39438908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 314
Target Start/End: Complemental strand, 22684010 - 22683982
Alignment:
| Q |
286 |
atgaattgattttacttaaaagtgagttg |
314 |
Q |
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| T |
22684010 |
atgaattgattttacttaaaagtgagttg |
22683982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 314
Target Start/End: Original strand, 29968939 - 29968974
Alignment:
| Q |
279 |
attttgaatgaattgattttacttaaaagtgagttg |
314 |
Q |
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||||||||||||||||||||| |||||||||||||| |
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| T |
29968939 |
attttgaatgaattgattttagttaaaagtgagttg |
29968974 |
T |
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