View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_high_3 (Length: 610)
Name: NF11557A_high_3
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_high_3 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 456; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 147 - 610
Target Start/End: Complemental strand, 32032356 - 32031894
Alignment:
| Q |
147 |
tcatagcatgagaacaacactttcattgcacacttcataatttataatagaaatattacatctccttctccaagtggagtagcagagagataacgacaac |
246 |
Q |
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| T |
32032356 |
tcatagcatgagaacaacactttcattgcacacttcataatttataatagaaatattacatctccttctccaagtggag-agcagagagataacgacaac |
32032258 |
T |
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| Q |
247 |
tttattgcaatctaaaaccactagtaggaaataactatattaaattgatacaattaaaatacaataccaagaccttcccaaagagaaatctaagcttatc |
346 |
Q |
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| T |
32032257 |
tttattgcaatctaaaaccactagtaggaaataactatattaaattgatacaattaaaatacaataccaagaccttcccaaagagaaatctaagcttatc |
32032158 |
T |
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| Q |
347 |
ttactacttattaggaaccttaataaaacccacgtgtgtagtattttctactttagtaagggtttgaagatcataagctttccaacaccttgagttatcc |
446 |
Q |
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| T |
32032157 |
ttactacttattaggaaccttaataaaacccacgtgtgtagtattttctactttagtaagggtttgaagatcataagctttccaacaccttgagttatcc |
32032058 |
T |
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| Q |
447 |
ttgtggtagaaatacccaacacacttacaatccttggtacatttgtttccacatgcatcttcacttacactatcaccagtagtgtatttgctcatgtagt |
546 |
Q |
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| T |
32032057 |
ttgtggtagaaatacccaacacacttacaatccttggtacatttgtttccacatgcatcttcacttacactatcaccagtagtgtatttgctcatgtagt |
32031958 |
T |
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| Q |
547 |
gctcaactccttcaattttgtagtaatgaaattcacttgctttgcatactcctcctaaaggctt |
610 |
Q |
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| T |
32031957 |
gctcaactccttcaattttgtagtaatgaaattcacttgctttgcatactcctcctaaaggctt |
32031894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 162 - 610
Target Start/End: Complemental strand, 32065503 - 32065034
Alignment:
| Q |
162 |
aacactttcattgcacacttcataatttataatagaaatattacatctccttctccaagtggagtagcagagagataa-cgacaactttattgcaatcta |
260 |
Q |
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| T |
32065503 |
aacactttcataacacacttcttaatttatagtacccatattacaagtccttctccacgtggagaa-caaagagataaaccacaactttattgcattcta |
32065405 |
T |
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| Q |
261 |
aaaccactagtaggaaataactatattaaattgatacaattaaaatacaataccaa---------------------gaccttcccaaagagaaatctaa |
339 |
Q |
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| T |
32065404 |
aaacaactagtaggaaataacaaaattaaattgatacaattaaaatacaataccaaaaaaaaaaaaaaaaataccaagaccttcccatggaaaaatctaa |
32065305 |
T |
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| Q |
340 |
gcttatcttactacttattaggaaccttaataaaacccacgtgtgtagtattttctactttagtaagggtttgaagatcataagctttccaacaccttga |
439 |
Q |
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| T |
32065304 |
gcttatcttattacttattaggcaccttaatataacccacatgtgtggtattttgaactctagtaagagtttgaagatcataagctatccaacaccttga |
32065205 |
T |
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| Q |
440 |
gttatccttgtggtagaaatacccaacacacttacaatccttggtacatttgtttccacatgcatcttcacttacactatcaccagtagtgtatttgctc |
539 |
Q |
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| T |
32065204 |
ttcatccttatggtagaaatacccaacacacttacaatcattggtacatttgtttccacatgcatcttcacttactatatcaccactagtgtatttgttc |
32065105 |
T |
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| Q |
540 |
atgtagtgctcaactccttcaattttgtagtaatgaaattcacttgctttgcatactcctcctaaaggctt |
610 |
Q |
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| T |
32065104 |
atgtaatgctcaactccttcaattttgtagtaatgaaattcacttgctttgcatactcctcctaaaggctt |
32065034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 32032497 - 32032384
Alignment:
| Q |
6 |
agtaacatagacccctgagggttatcagaaccaaatgaagcagaccctttcgagtttatgaaaccgatcaccaaattatatgacaaatctgcacccaccc |
105 |
Q |
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| T |
32032497 |
agtaacatagacccctgagggttatcagaaccaaatgaagcagaccctttcgagtttatgaaaccgatcaccgaattatatgacaaatctgcacccaccc |
32032398 |
T |
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| Q |
106 |
aatctttaagcaag |
119 |
Q |
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| T |
32032397 |
aatctttaagcaag |
32032384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 509 - 596
Target Start/End: Complemental strand, 32072458 - 32072371
Alignment:
| Q |
509 |
acttacactatcaccagtagtgtatttgctcatgtagtgctcaactccttcaattttgtagtaatgaaattcacttgctttgcatact |
596 |
Q |
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| T |
32072458 |
acttactctatcaccaacagtgtatttgctcatataatgctcaactccttcaattttgtagtaatgaaactcacttgctttgcatact |
32072371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 171 - 272
Target Start/End: Complemental strand, 32078824 - 32078727
Alignment:
| Q |
171 |
attgcacacttcataatttataatagaaatattacatctccttctccaagtggagtagcagagagataacgacaactttattgcaatctaaaaccactag |
270 |
Q |
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| T |
32078824 |
attgcacacttcttaatttattgtacaaatattacatgtccttctccaagtagag-aacagagaca-aac--caactatattgcaatctaaaaccactag |
32078729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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