View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11557A_high_4 (Length: 562)

Name: NF11557A_high_4
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11557A_high_4
NF11557A_high_4
[»] chr7 (5 HSPs)
chr7 (276-562)||(42251505-42251789)
chr7 (115-273)||(42022793-42022940)
chr7 (123-226)||(37486067-37486172)
chr7 (137-254)||(33524778-33524895)
chr7 (210-252)||(22620835-22620877)
[»] chr5 (1 HSPs)
chr5 (137-205)||(41364679-41364747)
[»] chr6 (2 HSPs)
chr6 (93-264)||(1825868-1826028)
chr6 (446-532)||(19473474-19473560)
[»] chr4 (4 HSPs)
chr4 (112-252)||(14270941-14271081)
chr4 (121-191)||(24899371-24899442)
chr4 (143-252)||(18102733-18102842)
chr4 (101-192)||(56329235-56329328)
[»] chr2 (5 HSPs)
chr2 (47-109)||(12694684-12694746)
chr2 (93-223)||(44512499-44512630)
chr2 (158-254)||(41125431-41125527)
chr2 (115-192)||(45134681-45134759)
chr2 (143-252)||(37860342-37860451)
[»] scaffold0332 (1 HSPs)
scaffold0332 (164-254)||(11965-12055)
[»] chr1 (1 HSPs)
chr1 (121-192)||(31231087-31231158)
[»] scaffold0012 (1 HSPs)
scaffold0012 (143-188)||(177590-177635)
[»] chr8 (1 HSPs)
chr8 (158-254)||(39587307-39587403)
[»] chr3 (2 HSPs)
chr3 (128-187)||(34329296-34329357)
chr3 (217-254)||(5411414-5411451)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 276 - 562
Target Start/End: Complemental strand, 42251789 - 42251505
Alignment:
Q  276 tggcgtttaacatgggaaaattgagttttttcccatgatgcacaaatgtcactttttctggcacgtgtcattttccactggttggtnnnnnnntaagann 375  Q
    ||||||||||| | ||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||       |||||      
T  42251789 tggcgtttaacctaggaaaattgagttctttcc-atgaggcacaaatgtcactttttctggcacgtgtcattttccaccggttggtaaaaaaataagatt 42251691  T
Q  376 nnnnn-gtcaaattgataaaacaatatttaatagccatcaattatttcaattacacctcccaaataaaaatctgcacttcccctttctccatctacatat 474  Q
          |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||| ||||||||||||||||||||||    
T  42251690 ttttttgtcaaatt-ataaaacaatatttaatagccatcaattatttcaattacatctcccaattaaaaatttgcacctcccctttctccatctacatat 42251592  T
Q  475 cttaacgttctatcatcctggccatggtgctgttgctgctgagtttgcacagtacaatctgcacctccgtcgtctcttatttatcgct 562  Q
    || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42251591 ct-aacgttctaccatcctggccatggtgctgttgctgctgagtttgcacagtacaatctgcacctccgtcgtctcttatttatcgct 42251505  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 115 - 273
Target Start/End: Complemental strand, 42022940 - 42022793
Alignment:
Q  115 aactacactattctaacaaactaattcatcattcattcatttcataatgattacaatc-accaatcacttatttatagcctcgatattctaacaacttca 213  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||| |||||| |  | |||||||||||||||||  | ||||||||||            
T  42022940 aactaaactattctaacaaactaattcttcattcattcatttcataatcattacatttgatcaatcacttatttatagttttgatattctaa-------- 42022849  T
Q  214 cctatgactcatcacaatggatctctctagatccttctagagagcatgacttatcaccta 273  Q
        ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  42022848 ----tgactcatcacaatggaactctctagatccttctagagagcatgactcatcaccta 42022793  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 37486067 - 37486172
Alignment:
Q  123 tattctaacaaactaatt--catcattcatt-catttcataatgattacaatcaccaatcacttatttatagcctcgatattctaacaacttcacctatg 219  Q
    ||||||||||||||||||  | ||||||||| ||||| ||||||||||||||||||||||| ||||||||| | |   |||||||||||||| ||| |||    
T  37486067 tattctaacaaactaattttcttcattcatttcatttgataatgattacaatcaccaatcatttatttataacatgtgtattctaacaactt-accaatg 37486165  T
Q  220 actcatc 226  Q
    |||||||    
T  37486166 actcatc 37486172  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 254
Target Start/End: Original strand, 33524778 - 33524895
Alignment:
Q  137 aattcatcattcattcatttcataatgattacaatcaccaatcacttatttatagcctcgatattctaacaacttcacctatgactcatcacaatggatc 236  Q
    ||||| |||||||||||||| |||||||||||||| | || || || ||||||||| |   |||| |||||| || |||||||| |||||  ||| ||||    
T  33524778 aattcttcattcattcatttgataatgattacaatgatcattccctgatttatagcatttgtattgtaacaatttaacctatgattcatcctaatagatc 33524877  T
Q  237 tctctagatccttctaga 254  Q
     |||||||||||||||||    
T  33524878 cctctagatccttctaga 33524895  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 22620835 - 22620877
Alignment:
Q  210 ttcacctatgactcatcacaatggatctctctagatccttcta 252  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  22620835 ttcacctatgactcatcacaatgaatctctctagatccttcta 22620877  T

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Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 41364747 - 41364679
Alignment:
Q  137 aattcatcattcattcatttcataatgattacaatcaccaatcacttatttatagcctcgatattctaa 205  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||    
T  41364747 aattcttcattcattcatttcataatgattacaatcatcaatcacttctttatagccttgatattctaa 41364679  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 264
Target Start/End: Complemental strand, 1826028 - 1825868
Alignment:
Q  93 tctaaaaaggac-taaaattaacaactacactattctaacaaactaattcatcattcattcatttcataatgattacaatcaccaatcacttatttatag 191  Q
    |||||||||||| |||||   |||||||||||||||||| |||||||||| ||| |||||||||||| |||||||||||| || || |  ||||||||||    
T  1826028 tctaaaaaggacctaaaagctacaactacactattctaaaaaactaattcttcactcattcatttcacaatgattacaatgacaaaaccattatttatag 1825929  T
Q  192 cctcgatattctaacaacttcacctatgactcatcacaatggatctctctagatccttctagagagcatgact 264  Q
    | | || ||         ||||   |||||||||||||| ||||||||||||||| ||||||| |||||||||    
T  1825928 cattgacat---------ttca---atgactcatcacaaaggatctctctagatcattctagaaagcatgact 1825868  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 446 - 532
Target Start/End: Complemental strand, 19473560 - 19473474
Alignment:
Q  446 ctgcacttcccctttctccatctacatatcttaacgttctatcatcctggccatgg-tgctgttgctgctgagtttgcacagtacaat 532  Q
    |||||| |||||||||||||||||||| ||| || |||| |||||| ||||||||| || ||||||||||||||||||||| ||||||    
T  19473560 ctgcacctcccctttctccatctacatctct-aatgttcaatcatcttggccatgggtgatgttgctgctgagtttgcacactacaat 19473474  T

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Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 112 - 252
Target Start/End: Original strand, 14270941 - 14271081
Alignment:
Q  112 aacaactacactattctaacaaactaa-ttcatcattc-attcatttcataatgattacaatcaccaatcacttatttatagcctcgatattctaacaac 209  Q
    |||||||| |||||||||||||||||| ||| |||||| ||||  |  |||||||||||||| |||  | || |||||||| | |   |||||||||||     
T  14270941 aacaactatactattctaacaaactaacttcttcattccattc--tagataatgattacaatgaccggttacctatttataacattagtattctaacaat 14271038  T
Q  210 ttcacctatgactcatcacaatggatctctctagatccttcta 252  Q
    || ||| ||||||||||| ||||||||||||||||||||||||    
T  14271039 ttaaccaatgactcatcataatggatctctctagatccttcta 14271081  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 24899442 - 24899371
Alignment:
Q  121 actattctaacaaactaattcatcattcattca-tttcataatgattacaatcaccaatcacttatttatag 191  Q
    ||||||||||||||||| ||| ||||||||| | ||| || ||||||||||| |||||||  ||||||||||    
T  24899442 actattctaacaaactatttcttcattcatttattttgattatgattacaatgaccaatccattatttatag 24899371  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 252
Target Start/End: Original strand, 18102733 - 18102842
Alignment:
Q  143 tcattcattcatttcataatgattacaatcaccaatcacttatttatagcctcgatattctaacaacttcacctatgactcatcacaatggatctctcta 242  Q
    |||||||||||||| |||||||||||||| |||| |   | ||||||||| | || ||||||| || |  ||| ||||||||||| || || ||||||||    
T  18102733 tcattcattcatttgataatgattacaatgaccactacataatttatagcattgacattctaagaattaaaccaatgactcatcataacgggtctctcta 18102832  T
Q  243 gatccttcta 252  Q
     | |||||||    
T  18102833 cacccttcta 18102842  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 192
Target Start/End: Complemental strand, 56329328 - 56329235
Alignment:
Q  101 ggactaaaattaacaactacactattctaaca-aacta-attcatcattcattcatttcataatgattacaatcaccaatcacttatttatagc 192  Q
    ||||||||| | ||||||||| |||| ||||| || || ||||  ||||||||||||| |||||||||| ||| ||||| || |||||||||||    
T  56329328 ggactaaaagttacaactacaatattgtaacataattatattctccattcattcatttgataatgattataatgaccaaccaattatttatagc 56329235  T

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Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 12694684 - 12694746
Alignment:
Q  47 atgtaaggtaccacttttgatggtacctacaagaaaggagaaatta-tctaaaaaggactaaaa 109  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  12694684 atgtaaggtgccacttttgatggtacctacaagaaaggagaaattactct-aaaaggactaaaa 12694746  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 223
Target Start/End: Complemental strand, 44512630 - 44512499
Alignment:
Q  93 tctaaaaaggactaaaattaacaactacactattctaacaaact--aattcatcattcattcatttcataatgattacaatcaccaatcacttatttata 190  Q
    |||||||||||| ||||||| | |||| | |||||||||| | |  ||||  |||||||||||||| ||||| || ||||| |  |||||||||||||||    
T  44512630 tctaaaaaggacaaaaatta-cgactatattattctaacataattaaatttttcattcattcatttgataatcataacaatgataaatcacttatttata 44512532  T
Q  191 gcctcgatattctaacaacttcacctatgactc 223  Q
     ||| |||||| ||| |||||||||||||||||    
T  44512531 accttgatattataataacttcacctatgactc 44512499  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 158 - 254
Target Start/End: Complemental strand, 41125527 - 41125431
Alignment:
Q  158 ataatgattacaatcaccaatcacttatttatagcctcgatattctaacaacttcacctatgactcatcacaatggatctctctagatccttctaga 254  Q
    |||||||||| |||||| |||||||||||||||   | | |||||||||||||| ||  ||||||| ||||||| ||||||| | ||||||||||||    
T  41125527 ataatgattagaatcactaatcacttatttataaagttggtattctaacaacttaactaatgactcgtcacaattgatctctttggatccttctaga 41125431  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 45134681 - 45134759
Alignment:
Q  115 aactacactattctaacaaactaattcat-cattcattcatttcataatgattacaatcaccaatcacttatttatagc 192  Q
    ||||| |||| ||||||||||||||| || ||||||||||||| ||| |||||||||| ||||| |  |||||||||||    
T  45134681 aactaaactaatctaacaaactaatttattcattcattcatttgatattgattacaataaccaacctattatttatagc 45134759  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 252
Target Start/End: Original strand, 37860342 - 37860451
Alignment:
Q  143 tcattcattcatttcataatgattacaatcaccaatcacttatttatagcctcgatattctaacaacttcacctatgactcatcacaatggatctctcta 242  Q
    |||||||||||||| |||||||||||||| |||| |   | ||||||||| | || ||||||| || |  ||| ||||||||||| || || ||||||||    
T  37860342 tcattcattcatttgataatgattacaatgaccactacataatttatagcattgacattctaagaattaaaccaatgactcatcataacgggtctctcta 37860441  T
Q  243 gatccttcta 252  Q
     | |||||||    
T  37860442 cacccttcta 37860451  T

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Target: scaffold0332 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 254
Target Start/End: Complemental strand, 12055 - 11965
Alignment:
Q  164 attacaatcaccaatcacttatttatagcctcgatattctaacaacttcacctatgactcatcacaatggatctctctagatccttctaga 254  Q
    |||||||| | |||||||||||||||| | ||   ||||||||||||| ||  |||| |||||| ||||||||||||||||||||||||||    
T  12055 attacaatgaacaatcacttatttataacatcagcattctaacaacttaactaatgagtcatcataatggatctctctagatccttctaga 11965  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 31231087 - 31231158
Alignment:
Q  121 actattctaacaaactaattcatcattcattcatttcataatgattacaatcaccaatcacttatttatagc 192  Q
    ||||||||| ||||||||||  |  ||||||||||| |||| |||||||||||||||||| |||||||||||    
T  31231087 actattctagcaaactaatttcttcttcattcatttgataaagattacaatcaccaatcatttatttatagc 31231158  T

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Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 177635 - 177590
Alignment:
Q  143 tcattcattcatttcataatgattacaatcaccaatcacttattta 188  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||    
T  177635 tcattcattcatttcataatgattataatgaccaatcacttattta 177590  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 254
Target Start/End: Complemental strand, 39587403 - 39587307
Alignment:
Q  158 ataatgattacaatcaccaatcacttatttatagcctcgatattctaacaacttcacctatgactcatcacaatggatctctctagatccttctaga 254  Q
    |||||||||||||| | || || |||||||||||| |    ||||||||||||| ||| || ||||| || |||||||||||| |||||||||||||    
T  39587403 ataatgattacaatgatcattcccttatttatagcttttgcattctaacaacttaaccaattactcaccataatggatctctcaagatccttctaga 39587307  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 34329296 - 34329357
Alignment:
Q  128 taacaaactaatt-catcattcattc-atttcataatgattacaatcaccaatcacttattt 187  Q
    ||||||||||||| | |||||||||| ||||||||||||| ||||| |||||||||||||||    
T  34329296 taacaaactaatttcttcattcattccatttcataatgatcacaatgaccaatcacttattt 34329357  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 254
Target Start/End: Complemental strand, 5411451 - 5411414
Alignment:
Q  217 atgactcatcacaatggatctctctagatccttctaga 254  Q
    ||||||||||| || |||||||||||||||||||||||    
T  5411451 atgactcatcataaaggatctctctagatccttctaga 5411414  T

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