View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_high_8 (Length: 380)
Name: NF11557A_high_8
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_high_8 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 32 - 380
Target Start/End: Original strand, 11731875 - 11732223
Alignment:
| Q |
32 |
aacctgtgataagatcttcaacaccttcaagtccatgcacgtgttggatctacatgacttggggatcaagattgtaccaacctctattgaggagatgaaa |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11731875 |
aacctgtgataagatcttcaacaccttcaagtccatgcacgtgttggatctacatgacttggggatcaagattgtaccaacctctattgaggagatgaaa |
11731974 |
T |
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| Q |
132 |
tacttgaggtttctagatctatcccacaacaacatagagaagcttcctagttgcatcacaaagcttatccatttgcaaaccttgaaactctcctactgtc |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11731975 |
tacttgaggtttctagatctatcccacaacaacatagagaagcttcctagttgcatcacaaagcttatccatttgcaaaccttgaaactctcctactgtc |
11732074 |
T |
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| Q |
232 |
atgtcctcaaggaattgccaaaagacttgaaggatctgactcgcctcagccatcttaacattgagggttgcttggatctaactcacatgccaaccgggat |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11732075 |
atgtcctcaaggaattgccaaaagacttgaaggatctgactcgcctcagccatcttaacattgagggttgcttggatctaactcacatgccaaccgggat |
11732174 |
T |
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| Q |
332 |
agataaactcacttccttacaaacattgtcacttttcgtggccagcaag |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11732175 |
agataaactcacttccttacaaacattgtcacttttcgtggccagcaag |
11732223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 39 - 380
Target Start/End: Complemental strand, 11902320 - 11901979
Alignment:
| Q |
39 |
gataagatcttcaacaccttcaagtccatgcacgtgttggatctacatgacttggggatcaagattgtaccaacctctattgaggagatgaaatacttga |
138 |
Q |
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| T |
11902320 |
gataagatcttcaacaccttcaagtccctacgtgtgctggatctacatgacttggggattaagatggttccaacatctattgaggaggtgaagtacttga |
11902221 |
T |
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| Q |
139 |
ggtttctagatctatcccacaacaacatagagaagcttcctagttgcatcacaaagcttatccatttgcaaaccttgaaactctcctactgtcatgtcct |
238 |
Q |
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||| ||||||||| || || ||||||||||| ||||| ||||||| |||||| ||||||||||| |||||||| |||||| | || | ||||| |||| |
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| T |
11902220 |
ggtatctagatctttctcataacaacatagaaaagctacctagttccatcactaagcttatccacttgcaaacattgaaattatcacaatgtcacatcct |
11902121 |
T |
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| Q |
239 |
caaggaattgccaaaagacttgaaggatctgactcgcctcagccatcttaacattgagggttgcttggatctaactcacatgccaaccgggatagataaa |
338 |
Q |
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| T |
11902120 |
caaggaattgccaaaagacttggatggcctgagttgcctcaaccatcttgacattgagggatgcctggatctaactcacatgccaagtggtataaataag |
11902021 |
T |
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| Q |
339 |
ctcacttccttacaaacattgtcacttttcgtggccagcaag |
380 |
Q |
| |
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|||||||| ||||||||||||||||| || |||||||||||| |
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| T |
11902020 |
ctcacttctttacaaacattgtcactctttgtggccagcaag |
11901979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 36 - 380
Target Start/End: Original strand, 11860231 - 11860578
Alignment:
| Q |
36 |
tgtgataagatcttcaacaccttcaagtccatgca---cgtgttggatctacatgacttggggatcaagattgtaccaacctctattgaggagatgaaat |
132 |
Q |
| |
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||||||||||||||| |||||||||||| | || |||||||||||||||||| ||||||||||||| || || | |||||||||||| |||| | |
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| T |
11860231 |
tgtgataagatcttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgaggatgtgaagt |
11860330 |
T |
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| Q |
133 |
acttgaggtttctagatctatcccacaacaacatagagaagcttcctagttgcatcacaaagcttatccatttgcaaaccttgaaactctcctactgtca |
232 |
Q |
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||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||| || | ||||| |
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| T |
11860331 |
acttgaggtatctagatctttcccataacaacatagagaagcttcctagttgcataacaaatcttatccacttgcaaacattgaaactgtctcaatgtca |
11860430 |
T |
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| Q |
233 |
tgtcctcaaggaattgccaaaagacttgaaggatctgactcgcctcagccatcttaacattgagggttgcttggatctaactcacatgccaaccgggata |
332 |
Q |
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||||||||||||||||||||||||| || | ||| ||| | |||||| |||||| || | ||||| ||||||||||||||||| ||||||| |||||| |
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| T |
11860431 |
tgtcctcaaggaattgccaaaagacatggacgatttgagttgcctcaatcatcttgacttagagggatgcttggatctaactcaaatgccaagtgggata |
11860530 |
T |
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| Q |
333 |
gataaactcacttccttacaaacattgtcacttttcgtggccagcaag |
380 |
Q |
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|||| || ||||| || |||||||||||||||||||| ||||||||| |
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| T |
11860531 |
aataagcttacttctttgcaaacattgtcacttttcgtagccagcaag |
11860578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 32 - 364
Target Start/End: Original strand, 12038995 - 12039327
Alignment:
| Q |
32 |
aacctgtgataagatcttcaacaccttcaagtccatgcacgtgttggatctacatgacttggggatcaagattgtaccaacctctattgaggagatgaaa |
131 |
Q |
| |
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|||||||||||||||||| ||||||||||| | |||| |||||| ||| | ||||||||||||||||||| | || | ||||||||| ||| |||| |
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| T |
12038995 |
aacctgtgataagatctttaacaccttcaaagctatgcgcgtgttagatatgcatgacttggggatcaagacgattccgagctctattgaagaggtgaag |
12039094 |
T |
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| Q |
132 |
tacttgaggtttctagatctatcccacaacaacatagagaagcttcctagttgcatcacaaagcttatccatttgcaaaccttgaaactctcctactgtc |
231 |
Q |
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|||||||||| ||||||||| || || |||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| || | |||| |
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| T |
12039095 |
tacttgaggtatctagatctttctcataacaacatagagaagcttcctagttgcatcacaactcttatccacttgcaaacgttgaaactttctcaatgtc |
12039194 |
T |
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| Q |
232 |
atgtcctcaaggaattgccaaaagacttgaaggatctgactcgcctcagccatcttaacattgagggttgcttggatctaactcacatgccaaccgggat |
331 |
Q |
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|| | ||||||||||||||||||||| || | ||| ||| | |||||| ||||||| || | ||||| ||||||||||||||||| ||||||| ||||| |
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| T |
12039195 |
attttctcaaggaattgccaaaagacatggatgatttgagttgcctcaaccatcttgacttagagggatgcttggatctaactcaaatgccaagtgggat |
12039294 |
T |
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| Q |
332 |
agataaactcacttccttacaaacattgtcact |
364 |
Q |
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| T |
12039295 |
aaataagctcacttctttacaaacattgtcact |
12039327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 36 - 380
Target Start/End: Original strand, 11828096 - 11828443
Alignment:
| Q |
36 |
tgtgataagatcttcaacaccttcaagtccatgca---cgtgttggatctacatgacttggggatcaagattgtaccaacctctattgaggagatgaaat |
132 |
Q |
| |
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||||||||||||||| |||||||||||| | || |||||||||||||||||||||||||||||||| || |||| |||||||||||| |||| | |
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| T |
11828096 |
tgtgataagatcttcgacaccttcaagtactcgctacgcgtgttggatctacatgacttggggatcaagacagttccaagctctattgaggatgtgaagt |
11828195 |
T |
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| Q |
133 |
acttgaggtttctagatctatcccacaacaacatagagaagcttcctagttgcatcacaaagcttatccatttgcaaaccttgaaactctcctactgtca |
232 |
Q |
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||||||||| ||||||||| || || |||||||| |||||||||||||||||||| ||||| |||||||| |||||||| |||||||| || ||||| |
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| T |
11828196 |
acttgaggtatctagatctttcacataacaacatggagaagcttcctagttgcataacaaatcttatccacttgcaaacgttgaaactgtctcgatgtca |
11828295 |
T |
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| Q |
233 |
tgtcctcaaggaattgccaaaagacttgaaggatctgactcgcctcagccatcttaacattgagggttgcttggatctaactcacatgccaaccgggata |
332 |
Q |
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||||||||| ||||||||||||||| || | ||| ||| | |||| | ||||||| || | || || ||||||||||||||||| ||||||| || ||| |
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| T |
11828296 |
tgtcctcaaagaattgccaaaagacatggatgatttgagttgccttaaccatcttgacttagatggatgcttggatctaactcaaatgccaagtggaata |
11828395 |
T |
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| Q |
333 |
gataaactcacttccttacaaacattgtcacttttcgtggccagcaag |
380 |
Q |
| |
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||| |||||||| || |||||||||||||||||||| ||||||||| |
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| T |
11828396 |
agtaagctcacttctttgcaaacattgtcacttttcgtagccagcaag |
11828443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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