View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_1 (Length: 862)
Name: NF11557A_low_1
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_1 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 519 - 862
Target Start/End: Original strand, 3544344 - 3544687
Alignment:
| Q |
519 |
cactacattgctagtaaacatggcggctagagccggggtttatttgctggtcttcatgagtcttgtcactgcagaatcctctataaccccgtcagagttc |
618 |
Q |
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| T |
3544344 |
cactatattgctagtaaacatggcggctagagccggggtttatttgctggtcttcatgagtcttgtcactgcagaatcctctataaccccgtcagagttc |
3544443 |
T |
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| Q |
619 |
atcaagtcctcatgcagagctactcgctatcctgttttatgtgttcaatgtctcatggggtatgcgagtgtgattggccaaagcgagcgacaactaacga |
718 |
Q |
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| T |
3544444 |
atcaggtcctcatgcagagctactcgctatcctgttttatgtgttcaatgtctcatggggtatgcgagtgtgattggccaaagcgagcgacaactaacga |
3544543 |
T |
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| Q |
719 |
taactgctctatcagtgagcatatctaggacacgatcgagtgcatcatttgtaaagaagatatcaaaagcaagaggcatcaagccaagggagtacagagc |
818 |
Q |
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| T |
3544544 |
taactgctctatcagtgagcatatctaggacacgatcgagtgcatcgtttgtaaagaagatatcaaaagcaagaggcatcaagccaagggagtacagagc |
3544643 |
T |
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| Q |
819 |
cgtacaagactgcatagaaaacatgggtgacagtttggacagtc |
862 |
Q |
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| T |
3544644 |
cgtacaagactgcatagaaaacatgggtgacagtttggacagtc |
3544687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 193 - 450
Target Start/End: Original strand, 3544026 - 3544283
Alignment:
| Q |
193 |
accactgggaggatgcggctaagcagannnnnnncaagggaaagcagtgccacttaaaacatgtcaacaaaagttgctttatctttaaaacttgtcaaaa |
292 |
Q |
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| T |
3544026 |
accactaggaggatgcggctaagcagatttttttcaagggaaagcagtgccacttaaaacatgtcaacaaaagttgctttatctttaaaacttgtcaaaa |
3544125 |
T |
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| Q |
293 |
aagaagcgatatcttcaaaagaatatattaataaatttaaagataacctgccaatattttccnnnnnnnaaaaagaaagtgggatacggtagcaatccat |
392 |
Q |
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| T |
3544126 |
aagaagcgatatcttcaaaagaatatattaataaatttaaagataacctgccaatattttccttttttaaaaaagaaagtgggatacggtagcaatccat |
3544225 |
T |
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| Q |
393 |
tcacagtcacatatagatacaataatacatgtctcccactttctacagtcctatttcc |
450 |
Q |
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| T |
3544226 |
tcacagtcacatatagatacaataatacatgtctcccacttcctacagtcctatttcc |
3544283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 3543890 - 3543977
Alignment:
| Q |
16 |
acatcagcttgatggatgatgaattatactaagtggtagtagtgggtttacattgacatattagatagaatgttaaattttattgagt |
103 |
Q |
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| T |
3543890 |
acataagcttgatggatgatgaattatactaagtggtagttgtgggtttacattgacaaattagatagaatgttaaattttattgagt |
3543977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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