View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11557A_low_101 (Length: 338)

Name: NF11557A_low_101
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11557A_low_101
NF11557A_low_101
[»] chr7 (3 HSPs)
chr7 (25-285)||(32656059-32656320)
chr7 (164-285)||(32661098-32661219)
chr7 (42-158)||(32662600-32662716)
[»] chr3 (7 HSPs)
chr3 (159-258)||(51654891-51654990)
chr3 (159-222)||(51654828-51654891)
chr3 (164-214)||(29619698-29619748)
chr3 (164-216)||(35184363-35184415)
chr3 (164-214)||(13454563-13454613)
chr3 (164-214)||(49808420-49808470)
chr3 (164-216)||(13458930-13458982)
[»] chr8 (2 HSPs)
chr8 (159-271)||(37288955-37289066)
chr8 (164-216)||(45400577-45400629)
[»] chr1 (8 HSPs)
chr1 (164-214)||(34108963-34109013)
chr1 (77-124)||(35364063-35364110)
chr1 (164-214)||(19767060-19767110)
chr1 (164-214)||(29307756-29307806)
chr1 (164-214)||(34109388-34109438)
chr1 (164-214)||(40236649-40236699)
chr1 (200-281)||(25872847-25872926)
chr1 (200-281)||(25874114-25874193)
[»] chr6 (3 HSPs)
chr6 (159-224)||(22275662-22275727)
chr6 (159-224)||(22275338-22275403)
chr6 (164-216)||(25000209-25000261)
[»] chr2 (6 HSPs)
chr2 (159-214)||(45061089-45061144)
chr2 (164-214)||(25647880-25647930)
chr2 (164-214)||(41354601-41354651)
chr2 (164-214)||(45060929-45060979)
chr2 (164-214)||(45158782-45158832)
chr2 (164-216)||(30409813-30409865)
[»] scaffold0506 (1 HSPs)
scaffold0506 (164-214)||(901-951)
[»] scaffold0160 (1 HSPs)
scaffold0160 (164-214)||(35568-35618)
[»] chr5 (2 HSPs)
chr5 (164-214)||(2396901-2396951)
chr5 (164-214)||(39871325-39871375)
[»] chr4 (2 HSPs)
chr4 (164-214)||(10257625-10257675)
chr4 (164-214)||(40912393-40912443)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 25 - 285
Target Start/End: Original strand, 32656059 - 32656320
Alignment:
25 taattttatctcatgacatatagtttgtttcaatgtatcnnnnnnnncaatgcagaaggtgaatgttcaatccataaaa-gcaatcagatagatttcaaa 123  Q
    |||||||||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
32656059 taattttatctcatgacatatactttgtttcaatgtatcttttttttcaatgcagaaggtgaatgttcaatccataaaaagcaattagatagatttcaaa 32656158  T
124 acattcactagaaattgattgtcatgatagttgcttcttcttatctataaaagttaacccgaaagttaatttttatcctaattttaacctaaaccctatt 223  Q
    |||||||||||||  ||||| ||||||| |||| ||||| |||||||||||||||||| |||||||||| ||||| ||||||||||||||||| | ||||    
32656159 acattcactagaatgtgattttcatgatcgttgtttcttattatctataaaagttaactcgaaagttaaattttaccctaattttaacctaaatcatatt 32656258  T
224 gattaaatttannnnnnnaaccctaatgcttaattccgatttgtttaagtctattaatccta 285  Q
    |||||||||||       ||||||||||||||||||||||||||||||  ||||||||||||    
32656259 gattaaatttactgttttaaccctaatgcttaattccgatttgtttaaccctattaatccta 32656320  T

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Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 164 - 285
Target Start/End: Original strand, 32661098 - 32661219
Alignment:
164 ttatctataaaagttaacccgaaagttaatttttatcctaattttaacctaaaccctattgattaaatttannnnnnnaaccctaatgcttaattccgat 263  Q
    ||||||||||||||||||||||||| | ||||||  |||||||||||||||||||||||||||||||||||       |||||||||||||||||| |||    
32661098 ttatctataaaagttaacccgaaagcttatttttgccctaattttaacctaaaccctattgattaaatttactgttttaaccctaatgcttaattctgat 32661197  T
264 ttgtttaagtctattaatccta 285  Q
    |||||||| |||||||||||||    
32661198 ttgtttaactctattaatccta 32661219  T

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Target: chr7; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 42 - 158
Target Start/End: Original strand, 32662600 - 32662716
Alignment:
42 atatagtttgtttcaatgtatcnnnnnnnncaatgcagaaggtgaatgttcaatccataaaagcaatcagatagatttcaaaacattcactagaaattga 141  Q
    ||||| ||||||||||||||||        |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||  |||    
32662600 atatactttgtttcaatgtatcttttttttcaatgcagaaggtgaatgttcaatccgtaaaagcaattagatagatttcaaaacattcactagaaggtga 32662699  T
142 ttgtcatgatagttgct 158  Q
    |||||||||| ||||||    
32662700 ttgtcatgatcgttgct 32662716  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 51654891 - 51654990
Alignment:
159 tcttcttatctataaaagttaacccgaaagttaatttttatcctaattttaacctaaaccctattgattaaatttannnnnnnaaccctaatgcttaatt 258  Q
    ||||||||| ||| |||||||||||||||| | ||||||  |||||||||||||||||||||||||||||||||||       |||||||||||||||||    
51654891 tcttcttatatattaaagttaacccgaaagcttatttttgccctaattttaacctaaaccctattgattaaatttactgttttaaccctaatgcttaatt 51654990  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 222
Target Start/End: Original strand, 51654828 - 51654891
Alignment:
159 tcttcttatctataaaagttaacccgaaagttaatttttatcctaattttaacctaaaccctat 222  Q
    ||||||||| ||| |||||||||||||||  | ||||||  |||||||||||||||||||||||    
51654828 tcttcttatatattaaagttaacccgaaaacttatttttgccctaattttaacctaaaccctat 51654891  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 29619748 - 29619698
Alignment:
164 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 214  Q
    |||| |||||||||||| ||| ||||||||||||| |||||||||||||||    
29619748 ttatatataaaagttaatccgtaagttaatttttaacctaattttaaccta 29619698  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 35184363 - 35184415
Alignment:
164 ttatctataaaagttaacccgaaagttaatttttatcctaattttaacctaaa 216  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||||    
35184363 ttatatataaaagttaacccgtaagccaatttttaacctaattttaacctaaa 35184415  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 13454613 - 13454563
Alignment:
164 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 214  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
13454613 ttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 13454563  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 49808470 - 49808420
Alignment:
164 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 214  Q
    |||| |||||||||||| ||| |||| |||||||| |||||||||||||||    
49808470 ttatatataaaagttaatccgtaagtcaatttttaacctaattttaaccta 49808420  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 13458982 - 13458930
Alignment:
164 ttatctataaaagttaacccgaaagttaatttttatcctaattttaacctaaa 216  Q
    |||| ||||||||||||| || |||  |||||||| |||||||||||||||||    
13458982 ttatatataaaagttaactcgtaagccaatttttaacctaattttaacctaaa 13458930  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 271
Target Start/End: Original strand, 37288955 - 37289066
Alignment:
159 tcttcttatctataaaagttaacccgaaagttaatttttatcctaattttaacctaaaccctattgattaaatttannnnnnnaaccctaatgcttaatt 258  Q
    ||||||||||||||||| |||| || |||||| ||||||  |||||||||||| |||| | |||||||||||||||       |||||||||||||||||    
37288955 tcttcttatctataaaa-ttaatccaaaagtttatttttgccctaattttaacataaatcatattgattaaatttattgttttaaccctaatgcttaatt 37289053  T
259 ccgatttgtttaa 271  Q
    | |||||||||||    
37289054 ctgatttgtttaa 37289066  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 45400629 - 45400577
Alignment:
164 ttatctataaaagttaacccgaaagttaatttttatcctaattttaacctaaa 216  Q
    |||| |||||||||||||||| ||||||||||||| |||||||||||||||||    
45400629 ttatatataaaagttaacccgtaagttaatttttaacctaattttaacctaaa 45400577  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 34109013 - 34108963
Alignment:
164 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 214  Q
    |||| |||||||||||||||| |||| |||||||| |||||||||||||||    
34109013 ttatatataaaagttaacccgtaagtcaatttttaacctaattttaaccta 34108963  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 35364110 - 35364063
Alignment:
77 cagaaggtgaatgttcaatccataaaagcaatcagatagatttcaaaa 124  Q
    ||||||||||||||||||| |||||||||||| |||  ||||||||||    
35364110 cagaaggtgaatgttcaatacataaaagcaattagagggatttcaaaa 35364063  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 19767110 - 19767060
Alignment:
164 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 214  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
19767110 ttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 19767060  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 29307756 - 29307806
Alignment:
164 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 214  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
29307756 ttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 29307806  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 34109438 - 34109388
Alignment:
164 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 214  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
34109438 ttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 34109388  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 40236699 - 40236649
Alignment:
164 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 214  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
40236699 ttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 40236649  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 281
Target Start/End: Original strand, 25872847 - 25872926
Alignment:
200 cctaattttaacctaaaccctattgattaaatttannnnnnnaaccctaatgcttaattccgatttgtttaagtctattaat 281  Q
    ||||||||||||||||| |||||||  ||||||||       |||||||||||||||||||  |||||||||  ||||||||    
25872847 cctaattttaacctaaatcctattgcataaatttactgtattaaccctaatgcttaattcc--tttgtttaaccctattaat 25872926  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 281
Target Start/End: Original strand, 25874114 - 25874193
Alignment:
200 cctaattttaacctaaaccctattgattaaatttannnnnnnaaccctaatgcttaattccgatttgtttaagtctattaat 281  Q
    ||||||||||||||||| |||||||  ||||||||       |||||||||||||||||||  |||||||||  ||||||||    
25874114 cctaattttaacctaaatcctattgcataaatttactgtattaaccctaatgcttaattcc--tttgtttaaccctattaat 25874193  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 22275662 - 22275727
Alignment:
159 tcttcttatctataaaagttaacccgaaagttaatttttatcctaattttaacctaaaccctattg 224  Q
    ||||||||| ||| ||||||||||||||||   ||||| | ||||||||||| |||||||||||||    
22275662 tcttcttatatattaaagttaacccgaaagcatattttaaccctaattttaagctaaaccctattg 22275727  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 22275338 - 22275403
Alignment:
159 tcttcttatctataaaagttaacccgaaagttaatttttatcctaattttaacctaaaccctattg 224  Q
    ||||||||| ||| ||||||||||||||||   |||||  ||||||||||||| ||||| ||||||    
22275338 tcttcttatatattaaagttaacccgaaagcatattttagtcctaattttaacttaaactctattg 22275403  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 25000209 - 25000261
Alignment:
164 ttatctataaaagttaacccgaaagttaatttttatcctaattttaacctaaa 216  Q
    |||| ||| |||||||||||||| ||||||| ||  |||||||||||||||||    
25000209 ttatttattaaagttaacccgaaggttaattgttgccctaattttaacctaaa 25000261  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 45061144 - 45061089
Alignment:
159 tcttcttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 214  Q
    |||| |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
45061144 tctttttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 45061089  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 25647880 - 25647930
Alignment:
164 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 214  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
25647880 ttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 25647930  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 41354601 - 41354651
Alignment:
164 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 214  Q
    |||| |||||||||||||| | |||| |||||||| |||||||||||||||    
41354601 ttatatataaaagttaacctgtaagtcaatttttaacctaattttaaccta 41354651  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 45060979 - 45060929
Alignment:
164 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 214  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
45060979 ttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 45060929  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 45158832 - 45158782
Alignment:
164 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 214  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
45158832 ttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 45158782  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 30409865 - 30409813
Alignment:
164 ttatctataaaagttaacccgaaagttaatttttatcctaattttaacctaaa 216  Q
    |||| |||||||||||||||| || | |||||||| ||||||||||| |||||    
30409865 ttatatataaaagttaacccgtaaatcaatttttaacctaattttaatctaaa 30409813  T

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Target: scaffold0506 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0506
Description:

Target: scaffold0506; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 951 - 901
Alignment:
164 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 214  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
951 ttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 901  T

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Target: scaffold0160 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 35568 - 35618
Alignment:
164 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 214  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
35568 ttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 35618  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 2396951 - 2396901
Alignment:
164 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 214  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
2396951 ttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 2396901  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 39871325 - 39871375
Alignment:
164 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 214  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
39871325 ttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 39871375  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 10257675 - 10257625
Alignment:
164 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 214  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
10257675 ttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 10257625  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 40912443 - 40912393
Alignment:
164 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 214  Q
    |||| |||||||||||||||| || ||||||||||  ||||||||||||||    
40912443 ttatatataaaagttaacccgtaaattaatttttaatctaattttaaccta 40912393  T

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