View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_105 (Length: 336)
Name: NF11557A_low_105
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_105 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 21 - 317
Target Start/End: Complemental strand, 20208951 - 20208655
Alignment:
| Q |
21 |
gtgggtcgacacacggtcatctccgaccttcaactcatattagagtttcatcaggaatcgattatcaacccgacgtatgcaaagacttcaaggagaccgg |
120 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
20208951 |
gtgggtcgacacacggtcctctccgaccttcaactcatattagagtttcatcaagaatcgattatcaacccgacctatgcaaagacttcaaggagaccgg |
20208852 |
T |
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| Q |
121 |
atattgtggctacggcgattcatgcaagtttttgcacgaccgaactgattacaagtccgggtggcaattagagaaagaatggaatgaaaccgagaagagg |
220 |
Q |
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| T |
20208851 |
atattgtggctacggcgattcatgcaagtttttgcacgaccgaactgattacaagtccgggtggcaattagagaaagaatggaatgaaaccgaaaagagg |
20208752 |
T |
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| Q |
221 |
agggtgcgctgatggtttgtttgacgagagtgacgatgatggtatgcatgcacattttcatttttgttgatctctctctctgttccatgcacatgat |
317 |
Q |
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| T |
20208751 |
agggtgcgctgatggtttgtttgacgagagtgacgatgaaggtatgcatgcacattttcatttttgttgatctctctctctgttccatgcacatgat |
20208655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 20228659 - 20228440
Alignment:
| Q |
21 |
gtgggtcgacacacggtcatctccgaccttcaactcatattagagtttcatcaggaatcgattatcaacccgacgtatgcaaagacttcaaggagaccgg |
120 |
Q |
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| T |
20228659 |
gtgggtcgacacacggtcctctccgaccttcaactcatattagagtttcatcaagaatcgattatcaacccgacctatgcaaagacttcaaggagaccgg |
20228560 |
T |
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| Q |
121 |
atattgtggctacggcgattcatgcaagtttttgcacgaccgaactgattacaagtccgggtggcaattagagaaagaatggaatgaaaccgagaagagg |
220 |
Q |
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| T |
20228559 |
atattgtggctacggcgattcatgcaagtttttgcacgaccgaactgattacaagtccgggtggcaattagagaaagaatggaatgaaaccgaaaagagg |
20228460 |
T |
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| Q |
221 |
agggtgcgctgatggtttgt |
240 |
Q |
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|||||||||||||||||||| |
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| T |
20228459 |
agggtgcgctgatggtttgt |
20228440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 20211999 - 20211921
Alignment:
| Q |
241 |
ttgacgagagtgacgatgatggtatgcatgcacattttcatttttgttgatctctct--ctctgttccatgcacatgat |
317 |
Q |
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| T |
20211999 |
ttgacgagagtgacgatgaaggtatgcattcacattttcatttttgttgatctctctctctctgttccattcacatgat |
20211921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 21 - 317
Target Start/End: Complemental strand, 44293463 - 44293167
Alignment:
| Q |
21 |
gtgggtcgacacacggtcatctccgaccttcaactcatattagagtttcatcaggaatcgattatcaacccgacgtatgcaaagacttcaaggagaccgg |
120 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44293463 |
gtgggtcgacacacggtcctctccgaccttcaactcatattagagtttcatcaagaatcgattatcaacccgacctatgcaaagacttcaaggagaccgg |
44293364 |
T |
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| Q |
121 |
atattgtggctacggcgattcatgcaagtttttgcacgaccgaactgattacaagtccgggtggcaattagagaaagaatggaatgaaaccgagaagagg |
220 |
Q |
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| T |
44293363 |
atattgtggctacggcgattcatgcaagtttttgcacgaccgaactgattacaagtccgggtggcaattagagaaagaatggaatgaaaccgaaaagagg |
44293264 |
T |
|
| Q |
221 |
agggtgcgctgatggtttgtttgacgagagtgacgatgatggtatgcatgcacattttcatttttgttgatctctctctctgttccatgcacatgat |
317 |
Q |
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| T |
44293263 |
agggtgcgctgatggtttgtttgacgagagtgacgatgaaggtatgcatgcacattttcatttttgttgatctctctctctgttccatgcacatgat |
44293167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 44484696 - 44484498
Alignment:
| Q |
15 |
gaacctgtgggtcgacacacggtcatctccgaccttcaactcatattagagtttcatcaggaatcgattatcaacccgacgtatgcaaagacttcaagga |
114 |
Q |
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| T |
44484696 |
gaaccggtgggttgacacacggtcctctccgaccttcaactcatattagagtttcatcaagaatcgattatcaacccgacctatgcaaagacttcaagga |
44484597 |
T |
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| Q |
115 |
gaccggatattgtggc-tacggcgattcatgcaagtttttgcacgaccgaactgattacaagtccgggtggcaattagagaaagaatggaatgaaaccga |
213 |
Q |
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||| |||||||||||| ||| ||||||||| |||||||||||||||||||| ||||||||||| |||||||| || || ||||||| |||||||| |
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| T |
44484596 |
gactggatattgtggcatacaacgattcatgtaagtttttgcacgaccgaaccgattacaagtc----tggcaattggataaggaatggagggaaaccga |
44484501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 44296511 - 44296433
Alignment:
| Q |
241 |
ttgacgagagtgacgatgatggtatgcatgcacattttcatttttgttgatctctct--ctctgttccatgcacatgat |
317 |
Q |
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||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
44296511 |
ttgacgagagtgacgatgaaggtatgcattcacattttcatttttgttgatctctctctctctgttccattcacatgat |
44296433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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