View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_107 (Length: 336)
Name: NF11557A_low_107
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_107 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 5678293 - 5678630
Alignment:
| Q |
1 |
tcacttggaatctcctgagaaaaaatcctataattaagcaatacaactcattggtttcagttactaaaatccaacaaaagttagcaaacaagaacatgca |
100 |
Q |
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| T |
5678293 |
tcacttggaatctcctgagaaaaaatcctataattaagcaatacaactcattggtttcagttactaaaatccaacaaaagttagcaaacaagaacatgca |
5678392 |
T |
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| Q |
101 |
caagaaaagtgtcaagtacatttgacatatatatacataaacatnnnnnnn--tataccagtcacttgttcttttcatggcactagatagaagctcttgc |
198 |
Q |
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| T |
5678393 |
caagaaaagtgtcaagtacatttgacatatatatacataaacataaaaaaaaatataccagtcacttgttcttttcatggcactagatagaagctcttgc |
5678492 |
T |
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| Q |
199 |
ttcttcacagacaagtcactagcagatgttgtagttttgtctagaccacgatccaccatggcaagtacagaaagatttctacctcactataaatgaagca |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5678493 |
ttcttcacagacaagtcactagcagatgttgtagttttgtctagaccacgatccaccatggcaagtacagaaagatttctacctcactataaatgaagca |
5678592 |
T |
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| Q |
299 |
gaaaaagattaatgagtcagttatagtataggctcaag |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
5678593 |
gaaaaagattaatgagtcagttatagtataggctcaag |
5678630 |
T |
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