View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_108 (Length: 336)
Name: NF11557A_low_108
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_108 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 26017327 - 26017009
Alignment:
| Q |
19 |
gcctgtaccaatcacaaacaaaaatcttagactatatattggtccttgcacatgcatccattttgtaaatcccattaaccataaattcaataaggccttt |
118 |
Q |
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| T |
26017327 |
gcctgtaccaatcacaaacaaaaatcttagactatatattggtccttacacatgtatccattttgtaaatcccattaaccataaatttaataagaccttt |
26017228 |
T |
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| Q |
119 |
ccaaatttgtttaataaatctatatagtatnnnnnnnnnnnn-----gatgaacaaatccatgcaacccatgaagttacctgtttagattgtccatgaag |
213 |
Q |
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| T |
26017227 |
ccaaatttgtttaataaatctatatagtataaaaaaaaaaaaaaaaagatgaacaaatccatgcaacccatgaagttacctgtttagattgtccatgaag |
26017128 |
T |
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| Q |
214 |
atcaagagaagcagagtaacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaacccatctccttctacctcaacaacatccttcgct |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26017127 |
atcaagagaagcagagtaacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaacccatctccttctacctcaacaacatccttcgct |
26017028 |
T |
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| Q |
314 |
gccgacggagatggtactg |
332 |
Q |
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|||||| |||||||||||| |
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| T |
26017027 |
gccgaccgagatggtactg |
26017009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 184 - 312
Target Start/End: Complemental strand, 26002114 - 26001986
Alignment:
| Q |
184 |
tgaagttacctgtttagattgtccatgaagatcaagagaagcagagtaacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaaccca |
283 |
Q |
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||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||| || || | |||| ||||||||||||||||||| ||| |
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| T |
26002114 |
tgaagttacctgttttgattcaccatgaagatcaacagaagcagaataacgatcctccatatgttttctacctcctttcttacaatacacagaaaatcca |
26002015 |
T |
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| Q |
284 |
tctccttctacctcaacaacatccttcgc |
312 |
Q |
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| T |
26002014 |
tctccctccacctcaacaacatccttcgc |
26001986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 312
Target Start/End: Complemental strand, 30373307 - 30373225
Alignment:
| Q |
230 |
taacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaacccatctccttctacctcaacaacatccttcgc |
312 |
Q |
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|||||||| ||||||| || ||| || |||||||||||||| |||||| |||||||||| || |||||||||||||| |||| |
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| T |
30373307 |
taacgatcttccatatactccctcctccctctcttacaataaacagaatacccatctccctccgcctcaacaacatccctcgc |
30373225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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