View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11557A_low_109 (Length: 335)
Name: NF11557A_low_109
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_109 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 6 - 329
Target Start/End: Original strand, 42732442 - 42732765
Alignment:
| Q |
6 |
tatacattaagggctgagacccaatagaacagtccattaggccccaattactcctgagaaagagcctcttcgttgtcacttgtataacctattactataa |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42732442 |
tatacattaagggctgagacccaatagaacagtccattaggccccaattactcctgagaaagagcctcttcgttgtcacttgtataatctattactataa |
42732541 |
T |
|
| Q |
106 |
gctctgactcattgtccttctctatagggaatgcttatattgttgcattgcatgcgttattatggtctgattactacatgacatcaataaataatcaata |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42732542 |
gctctgactcattgtccttctctatagggaatgcttatattattgcattgcatgcgttattatggtctgattactacatgacatcaataaataatcaata |
42732641 |
T |
|
| Q |
206 |
tttatggaacatagttgtatatagtatatacaacaacatgcctaccacaacgagagagaaagtgacttgtgaaggttgattattggtttcctttctctgc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42732642 |
tttatggaacatagttgtatatagtatatacaacaacaagccttccacaacgagagagaaagtgacttgtgaaggttgattattggtttcctttctctgt |
42732741 |
T |
|
| Q |
306 |
agtgatagtgaaatgactcggttg |
329 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
42732742 |
agtgatagtgaaatgactcggttg |
42732765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University