View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_114 (Length: 330)
Name: NF11557A_low_114
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_114 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 12 - 274
Target Start/End: Complemental strand, 33067350 - 33067088
Alignment:
| Q |
12 |
aatattgaaaggtgaagtaggaatgagaatgttgttgttggtataaaaattgatgaaatggatcctcctttacatgtgatcaagagggtgaataagttgg |
111 |
Q |
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| T |
33067350 |
aatattgaaaggtgtattaggaatgagaatgttgttgttggtataaaaattgatgaaatggatcctcctttacctgtgatcaagagggtgaataagttgg |
33067251 |
T |
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| Q |
112 |
aagaaggaaacaaaagtgagaatagtctttgggaaagaagatcaggttcaagtttggctccattgagaagtttacaggttcaacagattcaagttcaaac |
211 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33067250 |
aagaaggaaacaaaagtgagaatagtctttggaaaagaagatcaggttcaagtttggctccattgagaagtttacaggttcaacagattcaagttcaaac |
33067151 |
T |
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| Q |
212 |
tccaaagctttgtattgaacctacaactgtttgataatggaattagattagacagatccatag |
274 |
Q |
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| T |
33067150 |
tccaaagctttgtattgaacctacaactgtttgataatggaattagattagacagatccatag |
33067088 |
T |
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