View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_12 (Length: 524)
Name: NF11557A_low_12
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 7 - 518
Target Start/End: Complemental strand, 31594506 - 31594008
Alignment:
| Q |
7 |
gcacgaaccttgacttgtaatcgaacaagtgcgtgcatacactgcattgctatacgcgattgtctcctcacacacaccccgcgaaccaatgcttgcaatt |
106 |
Q |
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| T |
31594506 |
gcacgaaccttgacttgtaaacgaacaagtgcgtgcatacactgcattgctatacgcgattgtctcctcacacacaccccgcgaaccaatgcttgcaatt |
31594407 |
T |
|
| Q |
107 |
tcacaaggcttttcaatgccctatgtgctcttcttgcctgctcaattcaattcaatagtagcaaaatcaagtcaattaacatgagacacattttgtactt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
31594406 |
tcacaaggcttttcaatgccctatgtgctcttcttgcctgctcaattcaattcaatagtagcaaa-tcaagtcaattaacatgagaca--ttttgtactt |
31594310 |
T |
|
| Q |
207 |
ttaattcaaaaaagttagtcaaaaactatatgcaactatacacttgctagcaaaattgatatagttgctacaaattatgaatcacatacgagatgacccc |
306 |
Q |
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|| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31594309 |
tttattcaaaaaagttagtcaaaaactatat----------acttgctagcaatattgatatagttgctacaaattatgaatcacatactagatgacccc |
31594220 |
T |
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| Q |
307 |
tgaaataagcttgaatcttaattgctgcaaagtcttctttggtgaatatggtcgatgaagaattaatagctggtggtggcaagatgataaaattttctct |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31594219 |
tgaaataagcttgaatcttaattgctgcaaagtcttctttggtgaatatggtcaatgaagaattaatagctggtggtggcaagatgataaaattttctct |
31594120 |
T |
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| Q |
407 |
ggtggtggttgattcatttccaactatggcttgttccttttgatttgtgcaaacacttatacatggatggagagttatgtctttgttggatgatcttagg |
506 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31594119 |
ggtggtggttgattcatttccaagtatggcttgttccttttgatttgtgcaaacacttatacatggatggagagttatgtctttgttggatgatcttagg |
31594020 |
T |
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