View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11557A_low_120 (Length: 325)

Name: NF11557A_low_120
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11557A_low_120
NF11557A_low_120
[»] scaffold0024 (3 HSPs)
scaffold0024 (189-321)||(35824-35956)
scaffold0024 (85-192)||(36102-36209)
scaffold0024 (3-87)||(36247-36331)
[»] chr4 (12 HSPs)
chr4 (2-79)||(46737260-46737340)
chr4 (2-79)||(779749-779830)
chr4 (11-79)||(32004426-32004494)
chr4 (11-79)||(55292317-55292385)
chr4 (14-79)||(53599344-53599409)
chr4 (11-79)||(52708528-52708596)
chr4 (2-79)||(16467870-16467949)
chr4 (29-79)||(27924034-27924084)
chr4 (13-79)||(38179848-38179914)
chr4 (85-146)||(34316884-34316945)
chr4 (85-138)||(50620515-50620568)
chr4 (86-138)||(38721518-38721570)
[»] chr5 (3 HSPs)
chr5 (2-79)||(39075012-39075089)
chr5 (5-79)||(40197643-40197720)
chr5 (11-79)||(3247717-3247785)
[»] chr8 (6 HSPs)
chr8 (11-79)||(11517601-11517669)
chr8 (18-79)||(26750484-26750545)
chr8 (86-146)||(33700094-33700154)
chr8 (23-79)||(45120977-45121033)
chr8 (32-79)||(21575457-21575504)
chr8 (11-85)||(26040119-26040192)
[»] chr6 (12 HSPs)
chr6 (11-79)||(9062887-9062955)
chr6 (2-79)||(27133931-27134011)
chr6 (25-78)||(23898805-23898858)
chr6 (235-271)||(2659679-2659715)
chr6 (19-79)||(8307920-8307980)
chr6 (246-321)||(3004375-3004459)
chr6 (92-147)||(5495443-5495498)
chr6 (11-86)||(31238328-31238403)
chr6 (11-86)||(31247698-31247773)
chr6 (89-146)||(10298595-10298652)
chr6 (239-271)||(2998071-2998103)
chr6 (11-51)||(17848240-17848280)
[»] chr3 (9 HSPs)
chr3 (11-79)||(45745520-45745588)
chr3 (11-79)||(51672522-51672590)
chr3 (29-79)||(11083228-11083278)
chr3 (2-79)||(24924566-24924643)
chr3 (86-146)||(15332827-15332887)
chr3 (86-146)||(26406028-26406088)
chr3 (11-84)||(34809152-34809225)
chr3 (86-146)||(25527582-25527642)
chr3 (86-146)||(44561965-44562025)
[»] chr2 (4 HSPs)
chr2 (11-79)||(37807251-37807319)
chr2 (11-77)||(33839597-33839661)
chr2 (17-88)||(37985152-37985223)
chr2 (86-146)||(11931846-11931906)
[»] chr1 (10 HSPs)
chr1 (2-72)||(5302383-5302456)
chr1 (11-75)||(44107710-44107774)
chr1 (5-79)||(27858723-27858797)
chr1 (17-84)||(25113813-25113879)
chr1 (11-79)||(14321056-14321124)
chr1 (11-79)||(24084158-24084226)
chr1 (11-79)||(35838356-35838423)
chr1 (86-138)||(4302296-4302348)
chr1 (35-79)||(15646142-15646186)
chr1 (17-61)||(33776702-33776746)
[»] chr7 (4 HSPs)
chr7 (2-84)||(24613196-24613278)
chr7 (11-79)||(47639505-47639573)
chr7 (16-79)||(28749930-28749993)
chr7 (11-79)||(10980666-10980734)


Alignment Details
Target: scaffold0024 (Bit Score: 129; Significance: 9e-67; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 189 - 321
Target Start/End: Complemental strand, 35956 - 35824
Alignment:
Q  189 agtattaaatagagacaaatattaaataagaaatatgaaaatcttcataaggatacgagggagtgtcaaaagacttgaaacttttcattttctctcaaga 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35956 agtattaaatagagacaaatattaaataagaaatatgaaaatcttcataaggatacgagggagtgtcaaaagacttgaaacttttcattttctttcaaga 35857  T
Q  289 tgtcattgtccagcttggttgatgatatgaatg 321  Q
    |||||||||||||||||||||||||||||||||    
T  35856 tgtcattgtccagcttggttgatgatatgaatg 35824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 85 - 192
Target Start/End: Complemental strand, 36209 - 36102
Alignment:
Q  85 cttaaaaatattaatgattaaagatgtgcattggcatatgtggagtggttgactgcgacatgataaataagactgtgtctatcatatgattacctttttg 184  Q
    |||||||||||||||||||||||||||| || ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36209 cttaaaaatattaatgattaaagatgtgtatcggcatgtatggagtggttgactgcgacatgataaataagactgtgtctatcatatgattacctttttg 36110  T
Q  185 aaatagta 192  Q
    ||||||||    
T  36109 aaatagta 36102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 36331 - 36247
Alignment:
Q  3 tcattaaaaacaactttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctataatagtctt 87  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36331 tcattaaaaataactttttgactttcataaagttaaacattccatttttcaccgatttccaatgcataatttctataatagtctt 36247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 46737340 - 46737260
Alignment:
Q  2 ttcattaaaaacaa---ctttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||| |||||| | |||||||||||| ||||||||||    
T  46737340 ttcattaaaaacaataactttttgattttcataaagttaaacattccacttttcatcaatttccaatgcagaatttctata 46737260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 779830 - 779749
Alignment:
Q  2 ttcattaaaaacaac----tttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    |||||||||||||||    ||||||| |||||||||||||||||||| | |||||||| ||||| |||||||||||||||||    
T  779830 ttcattaaaaacaacaacttttttgactttcataaagttaaacattcaacttttcaccaatttcaaatgcataatttctata 779749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 32004494 - 32004426
Alignment:
Q  11 aacaactttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    ||||||||||||| |||||||||||||||||||||| ||||| || ||||  |||||||||||||||||    
T  32004494 aacaactttttgactttcataaagttaaacattccacttttccccaattttaaatgcataatttctata 32004426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 55292317 - 55292385
Alignment:
Q  11 aacaactttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    ||||||||||||||||||||||| ||||||||| || |||||||| ||||  ||| |||||||||||||    
T  55292317 aacaactttttgattttcataaaattaaacatttcagttttcaccaatttttaatacataatttctata 55292385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 53599409 - 53599344
Alignment:
Q  14 aactttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    |||||||| | ||||||||||||||||||| ||||||||| | ||||| |||| ||||||||||||    
T  53599409 aacttttttactttcataaagttaaacattacatttttcatcaatttctaatgtataatttctata 53599344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 52708528 - 52708596
Alignment:
Q  11 aacaactttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    ||||||||||||| |||||||||||||||||||| | |||||||  |||| ||||| | ||||||||||    
T  52708528 aacaactttttgactttcataaagttaaacattcaacttttcactaattttcaatgtacaatttctata 52708596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 16467870 - 16467949
Alignment:
Q  2 ttcattaaaaacaa---ctttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    ||||||||||||||   |||||| | ||||||||||||||||||| ||  ||||| | |||||||||||||||||||||||    
T  16467870 ttcattaaaaacaataacttttttactttcataaagttaaacatt-caactttcatcaatttccaatgcataatttctata 16467949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 27924034 - 27924084
Alignment:
Q  29 ataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    |||||||||||||||| | ||| |||| |||||||||||||||||||||||    
T  27924034 ataaagttaaacattcaactttccaccaatttccaatgcataatttctata 27924084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 38179914 - 38179848
Alignment:
Q  13 caactttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    ||||||||||| |||||||||||||||||||| | ||||||   ||||| ||| |||||||||||||    
T  38179914 caactttttgactttcataaagttaaacattcaacttttcataaatttctaatacataatttctata 38179848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 34316884 - 34316945
Alignment:
Q  85 cttaaaaatattaatgattaaagatgtgcattggcatatgtggagtggttgactgcgacatg 146  Q
    |||||| ||||||||||| |||| | || |||||||| |||| |||||||||||||||||||    
T  34316884 cttaaagatattaatgatcaaagttatgtattggcatgtgtgaagtggttgactgcgacatg 34316945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 50620568 - 50620515
Alignment:
Q  85 cttaaaaatattaatgattaaagatgtgcattggcatatgtggagtggttgact 138  Q
    |||||||||||||| | |||||  ||||||||| |||||||| |||||||||||    
T  50620568 cttaaaaatattaacggttaaaattgtgcattgacatatgtgaagtggttgact 50620515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 38721518 - 38721570
Alignment:
Q  86 ttaaaaatattaatgattaaagatgtgcattggcatatgtggagtggttgact 138  Q
    ||||| ||||||| ||| |||  |||||||||||||||||| |||||||||||    
T  38721518 ttaaagatattaacgatcaaaattgtgcattggcatatgtgaagtggttgact 38721570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 39075089 - 39075012
Alignment:
Q  2 ttcattaaaaacaactttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||  ||| | | |||| ||||||||||||||||||    
T  39075089 ttcattaaaaacaactttttgacttttataaagttaaacattccaccttttatcaattttcaatgcataatttctata 39075012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 40197643 - 40197720
Alignment:
Q  5 attaaaaacaac---tttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    ||||||||||||   ||||| ||||| ||||| |||||||||||| |||||||  |||||||||||||||||||||||    
T  40197643 attaaaaacaacgatttttttatttttataaaattaaacattccacttttcactaatttccaatgcataatttctata 40197720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 3247717 - 3247785
Alignment:
Q  11 aacaactttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    ||||||||||| | |||||| |||||||||||| || |||||||| ||||  ||||||||| |||||||    
T  3247717 aacaacttttttactttcatgaagttaaacattacacttttcaccaatttttaatgcataacttctata 3247785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 11517601 - 11517669
Alignment:
Q  11 aacaactttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    ||||||||||||| |||||||||||||||||||| | |||| ||| |||||||||||||||||| ||||    
T  11517601 aacaactttttgactttcataaagttaaacattctactttttaccaatttccaatgcataatttttata 11517669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 26750484 - 26750545
Alignment:
Q  18 ttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    |||||| ||||||||||||||||||  ||||||||| | ||||||||| |||||||||||||    
T  26750484 ttttgactttcataaagttaaacatctcatttttcatcaatttccaatacataatttctata 26750545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 33700154 - 33700094
Alignment:
Q  86 ttaaaaatattaatgattaaagatgtgcattggcatatgtggagtggttgactgcgacatg 146  Q
    ||||| ||||||||| | |||| |||| |||||||| |||| |||||||||||||||||||    
T  33700154 ttaaagatattaatggtcaaagttgtgtattggcatgtgtgcagtggttgactgcgacatg 33700094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 45121033 - 45120977
Alignment:
Q  23 attttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    ||||| ||||||||||| |||||| |||||||| | |||| ||||||||||||||||    
T  45121033 atttttataaagttaaatattccacttttcaccaacttccgatgcataatttctata 45120977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 21575504 - 21575457
Alignment:
Q  32 aagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    ||||||||||||| |||||| ||| |||||||||| ||||||||||||    
T  21575504 aagttaaacattctatttttaaccaatttccaatgtataatttctata 21575457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 26040192 - 26040119
Alignment:
Q  11 aacaactttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctataatagtc 85  Q
    |||||||||| || ||||||||| | |||| ||||| |||||| | |||||||||||| |||||||||| |||||    
T  26040192 aacaacttttcgactttcataaaatgaaactttccacttttcatc-atttccaatgcaaaatttctatattagtc 26040119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 9062887 - 9062955
Alignment:
Q  11 aacaactttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    |||||||||||   |||||||||||||||||||| | |||||||| |||||||||||||||||||||||    
T  9062887 aacaactttttatctttcataaagttaaacattcaacttttcaccaatttccaatgcataatttctata 9062955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 27134011 - 27133931
Alignment:
Q  2 ttcattaaaaacaac---tttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    |||||||||||||||   ||||| | ||||||| |||||||||||||| |||||||| |||| ||||||| |||| |||||    
T  27134011 ttcattaaaaacaacaatttttttactttcatatagttaaacattccacttttcaccaattttcaatgcaaaattactata 27133931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 23898805 - 23898858
Alignment:
Q  25 tttcataaagttaaacattccatttttcaccgatttccaatgcataatttctat 78  Q
    |||||||||||||||||||||| ||| || | ||||||||| ||||||||||||    
T  23898805 tttcataaagttaaacattccactttccatcaatttccaatacataatttctat 23898858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 2659715 - 2659679
Alignment:
Q  235 ataaggatacgagggagtgtcaaaagacttgaaactt 271  Q
    |||||||||| ||||||||||||||||||||||||||    
T  2659715 ataaggatacaagggagtgtcaaaagacttgaaactt 2659679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 8307980 - 8307920
Alignment:
Q  19 tttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    ||||| ||| ||||| | |||||||||| |||||| | |||||||||||||||||||||||    
T  8307980 tttgacttttataaaatcaaacattccacttttcatcaatttccaatgcataatttctata 8307920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 321
Target Start/End: Complemental strand, 3004459 - 3004375
Alignment:
Q  246 agggagtgtcaaaagacttgaaa-cttttcatttt--------ctctcaagatgtcattgtccagcttggttgatgatatgaatg 321  Q
    ||||||||||||||||||||||| |||||||||||        ||||||| |||||||| ||||||||||| |||||||| ||||    
T  3004459 agggagtgtcaaaagacttgaaagcttttcattttcttgctaactctcaatatgtcattctccagcttggtggatgatatcaatg 3004375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 5495443 - 5495498
Alignment:
Q  92 atattaatgattaaagatgtgcattggcatatgtggagtggttgactgcgacatga 147  Q
    ||||||||||| |||| |||  |||| |||||||| ||||||||||||||||||||    
T  5495443 atattaatgatcaaagttgtatattgacatatgtgcagtggttgactgcgacatga 5495498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 31238403 - 31238328
Alignment:
Q  11 aacaactttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctataatagtct 86  Q
    ||||||||||||| ||| |||||||  |||||| || |||||| |  ||||||||||| |||||||||| ||||||    
T  31238403 aacaactttttgacttttataaagtggaacatttcacttttcatcattttccaatgcaaaatttctatattagtct 31238328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 31247773 - 31247698
Alignment:
Q  11 aacaactttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctataatagtct 86  Q
    ||||||||||||| ||| |||||||  |||||| || |||||| |  ||||||||||| |||||||||| ||||||    
T  31247773 aacaactttttgacttttataaagtggaacatttcacttttcatcattttccaatgcaaaatttctatattagtct 31247698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 10298652 - 10298595
Alignment:
Q  89 aaaatattaatgattaaagatgtgcattggcatatgtggagtggttgactgcgacatg 146  Q
    |||||||||||| | |||| |||| |||||||| |||  |||||||||||||||||||    
T  10298652 aaaatattaatggtcaaagttgtgtattggcatgtgtacagtggttgactgcgacatg 10298595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 2998103 - 2998071
Alignment:
Q  239 ggatacgagggagtgtcaaaagacttgaaactt 271  Q
    ||||| |||||||||||||||||||||||||||    
T  2998103 ggataagagggagtgtcaaaagacttgaaactt 2998071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 17848240 - 17848280
Alignment:
Q  11 aacaactttttgattttcataaagttaaacattccattttt 51  Q
    ||||||| ||||||||| |||||||||||||||||| ||||    
T  17848240 aacaactatttgatttttataaagttaaacattccactttt 17848280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 45745588 - 45745520
Alignment:
Q  11 aacaactttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    ||||| ||||||| ||||||||||||||||||||||||||| | | |||| ||||||||||||||||||    
T  45745588 aacaattttttgactttcataaagttaaacattccattttttatcaattttcaatgcataatttctata 45745520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 51672590 - 51672522
Alignment:
Q  11 aacaactttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    |||| |||||| | ||| ||||||||||||||| ||||||||||| ||||| |||||||||||||||||    
T  51672590 aacagctttttaactttaataaagttaaacatttcatttttcaccaatttctaatgcataatttctata 51672522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 11083278 - 11083228
Alignment:
Q  29 ataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    ||||||||||||||||||||||||||  ||||||| |||||||||||||||    
T  11083278 ataaagttaaacattccatttttcactcatttccattgcataatttctata 11083228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 24924566 - 24924643
Alignment:
Q  2 ttcattaaaaacaactttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    |||||||||| |||| |||| | |||||||||| ||||||||  | |||||||| ||||  |||||||||||||||||    
T  24924566 ttcattaaaatcaacgttttaactttcataaagctaaacattatacttttcaccaatttttaatgcataatttctata 24924643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 15332887 - 15332827
Alignment:
Q  86 ttaaaaatattaatgattaaagatgtgcattggcatatgtggagtggttgactgcgacatg 146  Q
    ||||||||||||||| | |||| |||| |||||||| |||| |||||||||||| ||||||    
T  15332887 ttaaaaatattaatggtcaaagttgtgtattggcatgtgtgtagtggttgactgggacatg 15332827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 26406088 - 26406028
Alignment:
Q  86 ttaaaaatattaatgattaaagatgtgcattggcatatgtggagtggttgactgcgacatg 146  Q
    ||||| ||||||||| | |||| |||| ||| ||||||||| |||||||||||||||||||    
T  26406088 ttaaatatattaatggtcaaagttgtgtattagcatatgtgcagtggttgactgcgacatg 26406028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 34809225 - 34809152
Alignment:
Q  11 aacaactttttgattttcataaagttaaacattccatttttcaccgatttc-caatgcataatttctataatagt 84  Q
    ||||| ||||||| |||||||||||||||||||| | |||||||| ||||| ||||||| | |||||||| ||||    
T  34809225 aacaattttttgactttcataaagttaaacattctacttttcacc-atttctcaatgcaaagtttctatattagt 34809152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 25527582 - 25527642
Alignment:
Q  86 ttaaaaatattaatgattaaagatgtgcattggcatatgtggagtggttgactgcgacatg 146  Q
    ||||||||||||| ||| |||| ||||||||  ||| |||| ||||||| |||||||||||    
T  25527582 ttaaaaatattaacgatcaaagttgtgcattaacatgtgtgaagtggttaactgcgacatg 25527642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 44561965 - 44562025
Alignment:
Q  86 ttaaaaatattaatgattaaagatgtgcattggcatatgtggagtggttgactgcgacatg 146  Q
    ||||| ||||||| | | |||| |||| |||||||| |||| |||||||||||||||||||    
T  44561965 ttaaagatattaacggtcaaagttgtgaattggcatgtgtgaagtggttgactgcgacatg 44562025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 37807319 - 37807251
Alignment:
Q  11 aacaactttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    |||| |||||||| ||||||||||||||||||| ||||||||||| ||||  |||||||||||||||||    
T  37807319 aacacctttttgactttcataaagttaaacatttcatttttcaccaatttgtaatgcataatttctata 37807251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 33839597 - 33839661
Alignment:
Q  11 aacaactttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttcta 77  Q
    ||||||||||| |||||  |||||||||| ||| ||||||||||| |||| ||||||||||||||||    
T  33839597 aacaactttttaatttt--taaagttaaatatttcatttttcaccaattttcaatgcataatttcta 33839661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 37985223 - 37985152
Alignment:
Q  17 tttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctataatagtctta 88  Q
    ||||||| |||||||||||| |||||| || |||||||| |||| ||||| |||||||||||| || |||||    
T  37985223 tttttgactttcataaagtttaacatttcacttttcaccaattttcaatgtataatttctatattaatctta 37985152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 11931846 - 11931906
Alignment:
Q  86 ttaaaaatattaatgattaaagatgtgcattggcatatgtggagtggttgactgcgacatg 146  Q
    ||||| ||||||||| | |||| |||| |||||||| | || |||||||||||||||||||    
T  11931846 ttaaagatattaatggtcaaagttgtgtattggcatgtttgcagtggttgactgcgacatg 11931906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 5302383 - 5302456
Alignment:
Q  2 ttcattaaaaacaac---tttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataat 72  Q
    |||||||||||||||   ||||| | ||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  5302383 ttcattaaaaacaacaattttttaactttcataaagttaaatatttcatttttcaccgatttccaatgcataat 5302456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 44107774 - 44107710
Alignment:
Q  11 aacaactttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttc 75  Q
    ||||||||||||| |||||||||| ||||||||| | |||||||| ||||||||| |||||||||    
T  44107774 aacaactttttgactttcataaaggtaaacattctacttttcaccaatttccaatacataatttc 44107710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 27858723 - 27858797
Alignment:
Q  5 attaaaaacaactttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    ||||||||||| ||||||| ||||||||| |||||||||| | |||||||| |||| ||| ||||||||| ||||    
T  27858723 attaaaaacaattttttgactttcataaacttaaacattcaacttttcaccaattttcaacgcataatttttata 27858797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 25113879 - 25113813
Alignment:
Q  17 tttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctataatagt 84  Q
    ||||||| |||||||||||||||||||| |||||||||| | |||| ||||| |||||||||| ||||    
T  25113879 tttttgactttcataaagttaaacattctatttttcacc-aattcccatgcaaaatttctatattagt 25113813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 14321056 - 14321124
Alignment:
Q  11 aacaactttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    ||||||||||| | ||||||||| |||||||||  | |||||| | |||| ||||||||||||||||||    
T  14321056 aacaacttttttactttcataaaattaaacattttacttttcatcaattttcaatgcataatttctata 14321124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 24084226 - 24084158
Alignment:
Q  11 aacaactttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    ||||| ||||||| |||||||||||||||||||||| |||| | | |||| |||| |||||||| ||||    
T  24084226 aacaattttttgactttcataaagttaaacattccactttttatcaattttcaatacataatttttata 24084158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 35838356 - 35838423
Alignment:
Q  11 aacaactttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    ||||| ||||||| |||||||||||||| ||||| | |||||||| |||| ||||||||||||| ||||    
T  35838356 aacaattttttgactttcataaagttaa-cattctacttttcaccaattttcaatgcataatttttata 35838423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 4302296 - 4302348
Alignment:
Q  86 ttaaaaatattaatgattaaagatgtgcattggcatatgtggagtggttgact 138  Q
    ||||| ||||||| |||||||  |||||||||||||||||| ||| |||||||    
T  4302296 ttaaagatattaacgattaaaattgtgcattggcatatgtgaagtagttgact 4302348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 15646186 - 15646142
Alignment:
Q  35 ttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    |||||||||||| |||||| | |||| ||||||||||||||||||    
T  15646186 ttaaacattccacttttcatcaattttcaatgcataatttctata 15646142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 33776746 - 33776702
Alignment:
Q  17 tttttgattttcataaagttaaacattccatttttcaccgatttc 61  Q
    ||||||| |||||||||||||||||||||| | |||||| |||||    
T  33776746 tttttgactttcataaagttaaacattccactattcaccaatttc 33776702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 24613278 - 24613196
Alignment:
Q  2 ttcattaaaaacaactttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctataatagt 84  Q
    |||||||||||||||||||||| |||||||||||| ||||||| | |||||||  |||  ||||||| |||||||||| ||||    
T  24613278 ttcattaaaaacaactttttgactttcataaagttgaacattctacttttcactaattctcaatgcaaaatttctatattagt 24613196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 47639573 - 47639505
Alignment:
Q  11 aacaactttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||| | |||| ||||| ||||||||||||    
T  47639573 aacaactttttgacttttataaagttaaacatttcatttttcatcaattttcaatgaataatttctata 47639505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 28749993 - 28749930
Alignment:
Q  16 ctttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    |||||| | |||||||||||||||||||| | |||||| | |||||||||||||||||||||||    
T  28749993 cttttttactttcataaagttaaacattctacttttcatcaatttccaatgcataatttctata 28749930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 10980734 - 10980666
Alignment:
Q  11 aacaactttttgattttcataaagttaaacattccatttttcaccgatttccaatgcataatttctata 79  Q
    ||||||||||| | ||| |||||||||||||||| | |||||||  |||| |||| |||||||| ||||    
T  10980734 aacaactttttaacttttataaagttaaacattctacttttcactaattttcaatacataatttatata 10980666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University