View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11557A_low_124 (Length: 319)

Name: NF11557A_low_124
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11557A_low_124
NF11557A_low_124
[»] chr3 (20 HSPs)
chr3 (75-151)||(24357411-24357487)
chr3 (139-310)||(24357231-24357391)
chr3 (7-61)||(24357567-24357621)
chr3 (178-220)||(42886880-42886922)
chr3 (178-223)||(3985992-3986037)
chr3 (85-161)||(19115453-19115529)
chr3 (178-223)||(19115517-19115562)
chr3 (178-223)||(44064429-44064474)
chr3 (75-161)||(42571536-42571622)
chr3 (178-219)||(4759421-4759462)
chr3 (178-223)||(42571503-42571548)
chr3 (178-223)||(45460797-45460842)
chr3 (75-121)||(24356936-24356982)
chr3 (75-161)||(50038178-50038264)
chr3 (178-223)||(11337586-11337631)
chr3 (262-299)||(20028617-20028654)
chr3 (178-223)||(50038146-50038190)
chr3 (244-296)||(3986027-3986079)
chr3 (176-224)||(30680786-30680834)
chr3 (260-296)||(54918276-54918312)
[»] chr4 (24 HSPs)
chr4 (75-161)||(51733508-51733594)
chr4 (178-223)||(7905977-7906022)
chr4 (176-223)||(51733475-51733522)
chr4 (87-161)||(4505405-4505479)
chr4 (178-223)||(4505467-4505512)
chr4 (75-161)||(22220373-22220459)
chr4 (178-223)||(22220340-22220385)
chr4 (178-223)||(36558270-36558315)
chr4 (178-223)||(37624687-37624732)
chr4 (85-161)||(21864397-21864473)
chr4 (85-161)||(21920258-21920334)
chr4 (85-161)||(37624623-37624699)
chr4 (178-224)||(38510225-38510271)
chr4 (178-223)||(21864364-21864409)
chr4 (178-223)||(21920225-21920270)
chr4 (178-223)||(25231306-25231351)
chr4 (178-223)||(52915523-52915568)
chr4 (85-125)||(9809673-9809713)
chr4 (85-161)||(52915556-52915632)
chr4 (176-223)||(28308855-28308902)
chr4 (75-161)||(7906010-7906096)
chr4 (262-296)||(30261455-30261489)
chr4 (178-223)||(43337728-43337773)
chr4 (85-125)||(9811334-9811374)
[»] chr2 (20 HSPs)
chr2 (75-161)||(35799259-35799345)
chr2 (178-224)||(35799333-35799379)
chr2 (86-161)||(45423686-45423761)
chr2 (178-224)||(5717643-5717689)
chr2 (75-161)||(16463042-16463128)
chr2 (75-161)||(17695835-17695921)
chr2 (178-224)||(22620310-22620356)
chr2 (75-161)||(43427297-43427383)
chr2 (178-223)||(27986169-27986214)
chr2 (178-223)||(28072701-28072746)
chr2 (178-223)||(32022877-32022922)
chr2 (85-161)||(5717579-5717655)
chr2 (178-208)||(16463024-16463054)
chr2 (178-223)||(17695802-17695847)
chr2 (75-124)||(18719479-18719528)
chr2 (178-223)||(43427265-43427309)
chr2 (178-223)||(45423749-45423794)
chr2 (80-124)||(7028859-7028903)
chr2 (85-161)||(27986105-27986181)
chr2 (85-161)||(28072637-28072713)
[»] chr1 (27 HSPs)
chr1 (75-161)||(50249367-50249453)
chr1 (80-161)||(14373421-14373502)
chr1 (75-161)||(12591090-12591176)
chr1 (178-224)||(34032054-34032100)
chr1 (178-223)||(50249441-50249486)
chr1 (178-223)||(14373388-14373433)
chr1 (178-223)||(30293467-30293512)
chr1 (178-223)||(34047208-34047253)
chr1 (178-223)||(39125734-39125779)
chr1 (178-223)||(44257656-44257701)
chr1 (178-223)||(52023948-52023993)
chr1 (85-161)||(34032088-34032164)
chr1 (75-161)||(26352089-26352175)
chr1 (178-224)||(44557033-44557079)
chr1 (178-223)||(14593320-14593365)
chr1 (178-223)||(26352056-26352101)
chr1 (178-221)||(12591059-12591102)
chr1 (184-218)||(11799608-11799642)
chr1 (75-161)||(27721015-27721101)
chr1 (178-224)||(27721089-27721135)
chr1 (178-224)||(27721204-27721250)
chr1 (176-221)||(5672-5717)
chr1 (178-223)||(8894980-8895025)
chr1 (178-223)||(12484603-12484648)
chr1 (75-124)||(16757239-16757288)
chr1 (176-208)||(11449678-11449710)
chr1 (85-161)||(44257689-44257765)
[»] chr8 (14 HSPs)
chr8 (75-151)||(37559553-37559629)
chr8 (178-223)||(15160423-15160468)
chr8 (80-161)||(39765870-39765951)
chr8 (177-224)||(43724512-43724559)
chr8 (75-161)||(15160456-15160542)
chr8 (178-223)||(396191-396236)
chr8 (178-223)||(1511632-1511677)
chr8 (80-161)||(17655969-17656050)
chr8 (178-223)||(39765837-39765882)
chr8 (176-223)||(12339853-12339898)
chr8 (85-161)||(43724449-43724525)
chr8 (80-161)||(40362497-40362578)
chr8 (178-223)||(40399844-40399889)
chr8 (178-223)||(41679453-41679498)
[»] chr7 (30 HSPs)
chr7 (75-161)||(6747283-6747369)
chr7 (178-224)||(47187793-47187839)
chr7 (178-223)||(6747357-6747402)
chr7 (178-223)||(12977661-12977706)
chr7 (178-223)||(12983119-12983164)
chr7 (178-223)||(18292466-18292511)
chr7 (80-161)||(42285970-42286051)
chr7 (178-223)||(42286039-42286084)
chr7 (85-161)||(18292402-18292478)
chr7 (85-161)||(31883851-31883927)
chr7 (178-223)||(2297174-2297219)
chr7 (178-223)||(31883915-31883960)
chr7 (178-223)||(34274925-34274970)
chr7 (80-161)||(37502381-37502462)
chr7 (85-161)||(2297110-2297186)
chr7 (85-161)||(12977694-12977770)
chr7 (75-147)||(31929882-31929954)
chr7 (85-161)||(44567049-44567125)
chr7 (75-161)||(715871-715957)
chr7 (178-223)||(715838-715883)
chr7 (178-223)||(18270709-18270754)
chr7 (75-124)||(31196627-31196676)
chr7 (178-223)||(37502450-37502495)
chr7 (178-223)||(40339600-40339645)
chr7 (178-224)||(7900070-7900116)
chr7 (178-224)||(19303358-19303404)
chr7 (75-161)||(34274851-34274937)
chr7 (178-223)||(4268794-4268839)
chr7 (178-223)||(25441003-25441048)
chr7 (182-223)||(31929834-31929875)
[»] chr5 (15 HSPs)
chr5 (178-224)||(35765876-35765922)
chr5 (178-223)||(7317159-7317204)
chr5 (178-223)||(10344909-10344954)
chr5 (178-223)||(32158673-32158718)
chr5 (80-161)||(43584386-43584467)
chr5 (75-161)||(7317085-7317171)
chr5 (75-161)||(10344942-10345028)
chr5 (178-223)||(3024908-3024953)
chr5 (80-161)||(25362810-25362891)
chr5 (85-161)||(35765910-35765986)
chr5 (182-223)||(25362777-25362818)
chr5 (178-223)||(43584353-43584398)
chr5 (75-161)||(3024941-3025027)
chr5 (178-223)||(13974415-13974460)
chr5 (75-124)||(34534416-34534465)
[»] chr6 (10 HSPs)
chr6 (178-223)||(4850472-4850517)
chr6 (178-223)||(29400076-29400121)
chr6 (177-224)||(19689460-19689507)
chr6 (178-223)||(32429418-32429463)
chr6 (85-161)||(4850505-4850581)
chr6 (82-161)||(19689394-19689473)
chr6 (178-223)||(13503810-13503855)
chr6 (178-211)||(13597932-13597965)
chr6 (178-223)||(1502719-1502764)
chr6 (178-223)||(13011314-13011359)
[»] scaffold0332 (2 HSPs)
scaffold0332 (75-161)||(3820-3906)
scaffold0332 (178-223)||(3787-3832)
[»] scaffold0565 (1 HSPs)
scaffold0565 (260-296)||(9877-9913)


Alignment Details
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 24357487 - 24357411
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaata 151  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24357487 ttgtacccttcaattaatactatggacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaata 24357411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 139 - 310
Target Start/End: Complemental strand, 24357391 - 24357231
Alignment:
Q  139 gttaataagaatagtttggtaaacttctttnnnnnnngaataatttggtaaaataacaattctctttcttttaatcattgcattttgtaacnnnnnnnnn 238  Q
    ||||||||||||| ||||||||||||||||        ||| |||||||||||||||||||||||||||||||||||||||||||||||||             
T  24357391 gttaataagaataatttggtaaacttctttt-------aatcatttggtaaaataacaattctctttcttttaatcattgcattttgtaac----aaaaa 24357303  T
Q  239 nnnnntcattgcatttcgtagtatgtgtaaaaactttaaacgataatcattttgaaacggatgaagaataat 310  Q
         ||||||||||||| ||||||||| |||||||||||||| | | ||||||||||  ||||| ||||||    
T  24357302 aaaaatcattgcatttcgcagtatgtgtgaaaactttaaacgacatttattttgaaacaaatgaaaaataat 24357231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 24357621 - 24357567
Alignment:
Q  7 atttatatgtatggggacataagttactctcatcattttaaaatgagtgtccctt 61  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  24357621 atttatatgtatggggacataagttactctcttcattttaaaataagtgtccctt 24357567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 42886880 - 42886922
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  42886880 ataatttggtaaaataacaattctctttcttttaatcattgca 42886922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 3985992 - 3986037
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  3985992 ataatttggtaaaataaaaattctctttcttttaatcattgcattt 3986037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 19115453 - 19115529
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    ||||||||||| ||||||| | || |||||||||| |||||||| |||||||| ||||||||| ||| |||||||||    
T  19115453 caattaatactctgcacactacttccaaagtattacttttaaaactaaccaatagttaataaggataatttggtaaa 19115529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 19115517 - 19115562
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||    
T  19115517 ataatttggtaaaataaccattctttttcttttaatcattgcattt 19115562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 44064474 - 44064429
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||  |||||||||||||||||||||||||||    
T  44064474 ataatttggtaaaataatcattctctttcttttaatcattgcattt 44064429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 42571622 - 42571536
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| ||||||| | || |||||||||| |||||||| |||||||| | ||||||| ||| |||| ||||    
T  42571622 ttgtaccctccaattaatactctgcacactacttccaaagtattacttttaaaactaaccaatagctaataaggataatttgataaa 42571536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 4759421 - 4759462
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgc 219  Q
    |||||||||||||||||| |||| ||||||||||||||||||    
T  4759421 ataatttggtaaaataaccattcgctttcttttaatcattgc 4759462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 42571548 - 42571503
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||| ||||||||| ||||||| |||||||||||||||||||    
T  42571548 ataatttgataaaataaccattctctatcttttaatcattgcattt 42571503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 45460797 - 45460842
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||||||| | |||||||||||| ||||||||    
T  45460797 ataatttggtaaaataacaattttatttcttttaatctttgcattt 45460842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 24356982 - 24356936
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatt 121  Q
    |||| |||||||||||||| |||||||| || |||||||||||||||    
T  24356982 ttgtacccttcaattaatattatgcacatcactttcaaagtattatt 24356936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 50038264 - 50038178
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| ||||||| | ||  ||||||||| |||||||| ||| ||||  |||||||| ||| |||||||||    
T  50038264 ttgtaccctccaattaatactctgcacactacttctaaagtattacttttaaaactaagcaatatttaataaggataatttggtaaa 50038178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 11337631 - 11337586
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    ||||||||||||||| || |||| ||||||| ||||||||||||||    
T  11337631 ataatttggtaaaattactattccctttcttctaatcattgcattt 11337586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 299
Target Start/End: Original strand, 20028617 - 20028654
Alignment:
Q  262 tgtgtaaaaactttaaacgataatcattttgaaacgga 299  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  20028617 tgtgtaaaaaatttaaacgatattcattttgaaacgga 20028654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 50038190 - 50038146
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||  |||||||| ||||||||||||||||||    
T  50038190 ataatttggtaaaataatcattctctt-cttttaatcattgcattt 50038146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 3986027 - 3986079
Alignment:
Q  244 tcattgcatttcgtagtatgtgtaaaaactttaaacgataatcattttgaaac 296  Q
    |||||||||||| || | ||||||||||| |||||||| | ||||||||||||    
T  3986027 tcattgcatttcttaatgtgtgtaaaaaccttaaacgacattcattttgaaac 3986079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 30680834 - 30680786
Alignment:
Q  176 gaataatttggtaaaataacaattctctttcttttaatcattgcatttt 224  Q
    |||||||||||||||||||||  ||| ||||||||||||| | ||||||    
T  30680834 gaataatttggtaaaataacatctctttttcttttaatcaatacatttt 30680786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 296
Target Start/End: Original strand, 54918276 - 54918312
Alignment:
Q  260 tatgtgtaaaaactttaaacgataatcattttgaaac 296  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  54918276 tatgtgtaaaaaccttaaacgatactcattttgaaac 54918312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 51733594 - 51733508
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| ||||||| | || |||||||||| |||||||| |||||||| ||||||||||||| |||||||||    
T  51733594 ttgtaccctccaattaatactctgcacactacttccaaagtattacttttaaaactaaccaatagttaataagaataatttggtaaa 51733508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 7906022 - 7905977
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  7906022 ataatttggtaaaataacaattctctttcttttaatcattgcattt 7905977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 51733522 - 51733475
Alignment:
Q  176 gaataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  51733522 gaataatttggtaaaataaccattctctttcttttaatcattgcattt 51733475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 161
Target Start/End: Original strand, 4505405 - 4505479
Alignment:
Q  87 attaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    ||||||||| ||||||| | ||||||||||||| |||||||| |||||||| ||||||||| ||| |||||||||    
T  4505405 attaatactctgcacactactttcaaagtattagttttaaaactaaccaatagttaataaggataatttggtaaa 4505479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 4505467 - 4505512
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  4505467 ataatttggtaaaataaccattctctttcttttaatcattgcattt 4505512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 22220459 - 22220373
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||||||||||| | || |||| ||||| |||||||| |||||||| | ||||||| ||| |||||||||    
T  22220459 ttgtaccctccaattaatactatgcacactacttccaaaatattacttttaaaactaaccaatagctaataaggataatttggtaaa 22220373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 22220385 - 22220340
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||    
T  22220385 ataatttggtaaaataaccattctcattcttttaatcattgcattt 22220340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 36558315 - 36558270
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||    
T  36558315 ataatttggtaaaataaaaattatctttcttttaatcattgcattt 36558270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 37624687 - 37624732
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||  |||||||||||||||||||||||||||    
T  37624687 ataatttggtaaaataatcattctctttcttttaatcattgcattt 37624732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 21864473 - 21864397
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    ||||||||||| ||||||| | || |||||||||| |||||||| ||||||||  |||||||| ||| |||||||||    
T  21864473 caattaatactctgcacactacttccaaagtattacttttaaaactaaccaataattaataaggataatttggtaaa 21864397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 21920334 - 21920258
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    ||||||||||| ||||||| | || |||||||||| |||||||| ||||||||  |||||||| ||| |||||||||    
T  21920334 caattaatactctgcacactacttccaaagtattacttttaaaactaaccaataattaataaggataatttggtaaa 21920258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 37624623 - 37624699
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    ||||||||||| ||||||| | ||  |||||||||||||||||| ||||||||  |||||||| ||| |||||||||    
T  37624623 caattaatactctgcacactacttcaaaagtattatttttaaaactaaccaataattaataaggataatttggtaaa 37624699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 38510271 - 38510225
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcatttt 224  Q
    ||||||||||||||||||  |||| ||||||||||||||||||||||    
T  38510271 ataatttggtaaaataacctttctttttcttttaatcattgcatttt 38510225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 21864409 - 21864364
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||  |||||||||||||||||||||| ||||    
T  21864409 ataatttggtaaaataatcattctctttcttttaatcattgtattt 21864364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 21920270 - 21920225
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||  |||||||||||||||||||||| ||||    
T  21920270 ataatttggtaaaataatcattctctttcttttaatcattgtattt 21920225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 25231306 - 25231351
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||| ||||||||  |||||||||||||||||||||||||||    
T  25231306 ataatttgataaaataatcattctctttcttttaatcattgcattt 25231351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 52915568 - 52915523
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||  |||||||||||||||||||||| ||||    
T  52915568 ataatttggtaaaataatcattctctttcttttaatcattgtattt 52915523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 9809713 - 9809673
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattattttta 125  Q
    ||||||||||||||||||| | |||||||||||||||||||    
T  9809713 caattaatactatgcacactactttcaaagtattattttta 9809673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 52915632 - 52915556
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    ||||||||||| ||||||| | || |||||||||| |||||||| |||||||| | ||||||  ||| |||||||||    
T  52915632 caattaatactctgcacactacttccaaagtattacttttaaaactaaccaatagctaataaagataatttggtaaa 52915556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 28308855 - 28308902
Alignment:
Q  176 gaataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||| |||||||| | || |||||||||||||||||||||||    
T  28308855 gaataatttgataaaataatatttatctttcttttaatcattgcattt 28308902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 7906096 - 7906010
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| || ||||   || |||||||||| |||||||| |||| ||| ||||||||| ||| |||||||||    
T  7906096 ttgtaccctccaattaatactctggacactgcttccaaagtattacttttaaaactaacaaatagttaataaggataatttggtaaa 7906010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 30261455 - 30261489
Alignment:
Q  262 tgtgtaaaaactttaaacgataatcattttgaaac 296  Q
    |||||||||||||||||||||| ||||||||||||    
T  30261455 tgtgtaaaaactttaaacgatattcattttgaaac 30261489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 43337773 - 43337728
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||| ||||||||  |||||||||||||||||||||| ||||    
T  43337773 ataatttgataaaataatcattctctttcttttaatcattgtattt 43337728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 9811374 - 9811334
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattattttta 125  Q
    ||||||||||||||||||| | ||||||||||||| |||||    
T  9811374 caattaatactatgcacactactttcaaagtattactttta 9811334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 35799259 - 35799345
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||| ||||||||| | ||||||||||||| |||||||| |||||||| ||||||||| ||| |||||||||    
T  35799259 ttgtaccctccaattaatattatgcacactactttcaaagtattacttttaaaactaaccaatagttaataaggataatttggtaaa 35799345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 35799333 - 35799379
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcatttt 224  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  35799333 ataatttggtaaaataaccattctctttcttttaatcattgcatttt 35799379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 45423686 - 45423761
Alignment:
Q  86 aattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||||||||||||||||| | || |||||||||| |||||||| ||||||||  |||||||| ||| |||||||||    
T  45423686 aattaatactatgcacactacttccaaagtattagttttaaaactaaccaataattaataaggataatttggtaaa 45423761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 5717643 - 5717689
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcatttt 224  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||    
T  5717643 ataatttggtaaaataatcattctctttcttttaatcattgcatttt 5717689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 16463128 - 16463042
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| |||||||||||||||  ||||||| | || |||||||||| |||||||| |||||||| ||||| ||| ||| |||||||||    
T  16463128 ttgtacccttcaattaataccctgcacactacttccaaagtattacttttaaaactaaccaatagttaacaaggataatttggtaaa 16463042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 17695921 - 17695835
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| ||||||| | || |||||||||| |||||||| |||||||| ||||||||  ||| |||||||||    
T  17695921 ttgtaccctccaattaatactctgcacactacttccaaagtattacttttaaaactaaccaatagttaataaagataatttggtaaa 17695835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 22620356 - 22620310
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcatttt 224  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||    
T  22620356 ataatttagtaaaataaccattctctttcttttaatcattgcatttt 22620310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 43427383 - 43427297
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| ||||| | | || ||||||||||||||||||| |||| ||| | ||||||| ||| |||||||||    
T  43427383 ttgtaccctccaattaatactttgcacgctacttccaaagtattatttttaaaactaactaatagctaataaggataatttggtaaa 43427297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 27986169 - 27986214
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||| ||||||||| ||||||| |||||||||    
T  27986169 ataatttggtaaaataaccattctctttattttaataattgcattt 27986214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 28072701 - 28072746
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||| ||||||||| ||||||| |||||||||    
T  28072701 ataatttggtaaaataaccattctctttattttaataattgcattt 28072746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 32022922 - 32022877
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||  ||||||||||||||||||||| |||||    
T  32022922 ataatttggtaaaataatcattctctttcttttaatcattacattt 32022877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 5717579 - 5717655
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    ||||||||||| | ||||| | || |||||||||| |||||||| ||||||||  |||||||| ||| |||||||||    
T  5717579 caattaatactctacacactacttccaaagtattacttttaaaactaaccaatatttaataaggataatttggtaaa 5717655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 208
Target Start/End: Complemental strand, 16463054 - 16463024
Alignment:
Q  178 ataatttggtaaaataacaattctctttctt 208  Q
    |||||||||||||||||||||||||||||||    
T  16463054 ataatttggtaaaataacaattctctttctt 16463024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 17695847 - 17695802
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||| |||||| |||| ||||||| |||||||    
T  17695847 ataatttggtaaaataaccattctcattctcttaatcactgcattt 17695802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 18719528 - 18719479
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattattttt 124  Q
    |||| ||||||||||||||||||  |||| | ||||||||||||||||||    
T  18719528 ttgtacccttcaattaatactatatacactattttcaaagtattattttt 18719479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 43427309 - 43427265
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||| ||||||||| ||||||| |||||||||    
T  43427309 ataatttggtaaaataaccattctctttattttaat-attgcattt 43427265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 45423749 - 45423794
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    ||||||||||||||||| |||||| ||| ||||||||||| |||||    
T  45423749 ataatttggtaaaataataattctatttattttaatcatttcattt 45423794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 7028903 - 7028859
Alignment:
Q  80 cccttcaattaatactatgcacaccaatttcaaagtattattttt 124  Q
    ||||||||||||||||||  |||| | ||||||||||||||||||    
T  7028903 cccttcaattaatactatatacactactttcaaagtattattttt 7028859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 27986105 - 27986181
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    ||||||||||| | ||||| | || |||||||||| |||||||| ||| |||| | ||||||| ||| |||||||||    
T  27986105 caattaatactcttcacactacttccaaagtattacttttaaaactaatcaatagctaataaggataatttggtaaa 27986181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 28072637 - 28072713
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    ||||||||||| | ||||| | || |||||||||| |||||||| ||| |||| | ||||||| ||| |||||||||    
T  28072637 caattaatactcttcacactacttccaaagtattacttttaaaactaatcaatagctaataaggataatttggtaaa 28072713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 50249367 - 50249453
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| ||||||| | || |||||||||| ||||||||||||||||| ||||||||| ||| |||||||||    
T  50249367 ttgtaccctccaattaatactttgcacactacttccaaagtattacttttaaaattaaccaatagttaataaggataatttggtaaa 50249453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 14373502 - 14373421
Alignment:
Q  80 cccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| ||||||||| | ||||||| | |||||||||||||||||||||| |||||||| ||||||||| ||| |||||||||    
T  14373502 ccctccaattaataatctgcacactactttcaaagtattatttttaaaactaaccaatagttaataaggataatttggtaaa 14373421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 12591176 - 12591090
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| |||| |||||||||||  |||||| | ||||||| |||||||||||||| |||||||| ||||||||| ||| |||||||||    
T  12591176 ttgtaccctccaattaatactcagcacactactttcaaattattatttttaaaactaaccaatagttaataaggataatttggtaaa 12591090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 34032100 - 34032054
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcatttt 224  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  34032100 ataatttggtaaaataaccattctctttcttttaatcattgcatttt 34032054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 50249441 - 50249486
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  50249441 ataatttggtaaaataaccattctctttcttttaatcattgcattt 50249486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 14373433 - 14373388
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||    
T  14373433 ataatttggtaaaataaccattctttttcttttaatcattgcattt 14373388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 30293467 - 30293512
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||    
T  30293467 ataatttggtaaaataaccattatctttcttttaatcattgcattt 30293512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 34047253 - 34047208
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||  |||||||||||||||||||||||||||    
T  34047253 ataatttggtaaaataatcattctctttcttttaatcattgcattt 34047208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 39125734 - 39125779
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||    
T  39125734 ataatttagaaaaataacaattctctttcttttaatcattgcattt 39125779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 44257701 - 44257656
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||  |||||||||||||||||||||||||||    
T  44257701 ataatttggtaaaataattattctctttcttttaatcattgcattt 44257656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 52023993 - 52023948
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||  |||||||||||||||||||||||||||    
T  52023993 ataatttggtaaaataatcattctctttcttttaatcattgcattt 52023948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 34032164 - 34032088
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    ||||||||||| ||||| | | || |||||||||| |||||||| |||||||| ||||||||| ||| |||||||||    
T  34032164 caattaatactttgcacgctacttccaaagtattacttttaaaactaaccaatagttaataaggataatttggtaaa 34032088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 26352175 - 26352089
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| |||| |||||||||||  |||| | | ||||||||||||| |||||||| |||||||| || |||||| ||| |||||||||    
T  26352175 ttgtaccctccaattaatactcagcacgctactttcaaagtattacttttaaaactaaccaatagtcaataaggataatttggtaaa 26352089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 44557079 - 44557033
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcatttt 224  Q
    ||||||||||||||||||| |||||||||||||||| | ||||||||    
T  44557079 ataatttggtaaaataacatttctctttcttttaattaatgcatttt 44557033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 14593365 - 14593320
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||| ||| ||||| |||||||||||||||||    
T  14593365 ataatttggtaaaataaccattatcttttttttaatcattgcattt 14593320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 26352101 - 26352056
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||  ||||||||||||||||| |||||||||    
T  26352101 ataatttggtaaaataaacattctctttcttttaataattgcattt 26352056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 12591102 - 12591059
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcat 221  Q
    |||||||||||||||||  ||| |||||||||||||||||||||    
T  12591102 ataatttggtaaaataatcattatctttcttttaatcattgcat 12591059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 11799608 - 11799642
Alignment:
Q  184 tggtaaaataacaattctctttcttttaatcattg 218  Q
    ||||||||||||||||||||||||||||| |||||    
T  11799608 tggtaaaataacaattctctttcttttaaacattg 11799642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 27721015 - 27721101
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| |||| |||||||||||  |||||| | || |||||||||| |||||||| ||| |||| ||||||||| ||| |||| ||||    
T  27721015 ttgtaccctccaattaatactcagcacactacttccaaagtattacttttaaaactaatcaatagttaataaggataatttgataaa 27721101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 27721089 - 27721135
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcatttt 224  Q
    |||||||| ||||||||  |||| |||||||||||||||||||||||    
T  27721089 ataatttgataaaataatcattcactttcttttaatcattgcatttt 27721135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 27721204 - 27721250
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcatttt 224  Q
    |||||||| ||||||||  ||||||||||||||||| ||||||||||    
T  27721204 ataatttgataaaataatcattctctttcttttaattattgcatttt 27721250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 5717 - 5672
Alignment:
Q  176 gaataatttggtaaaataacaattctctttcttttaatcattgcat 221  Q
    ||||||||||||||||| || ||||||||| || ||||||||||||    
T  5717 gaataatttggtaaaattactattctctttattctaatcattgcat 5672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 8895025 - 8894980
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||||  ||||||||||||||| | |||||||    
T  8895025 ataatttggtaaaataacatctctctttcttttaattaatgcattt 8894980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 12484648 - 12484603
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    ||||||||||||||| |||||| |||||||||||||| ||| ||||    
T  12484648 ataatttggtaaaatgacaattatctttcttttaatctttgtattt 12484603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 16757288 - 16757239
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattattttt 124  Q
    |||| ||||||||||||||||||  |||| | ||||||||||||||||||    
T  16757288 ttgtacccttcaattaatactatatacacaactttcaaagtattattttt 16757239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 11449710 - 11449678
Alignment:
Q  176 gaataatttggtaaaataacaattctctttctt 208  Q
    |||||||||||||||||||||||| ||||||||    
T  11449710 gaataatttggtaaaataacaattttctttctt 11449678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 44257765 - 44257689
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    ||||||||||| | ||||| | || |||| ||||| |||||||| ||||||||  |||||||| ||| |||||||||    
T  44257765 caattaatactctacacactacttccaaaatattacttttaaaactaaccaataattaataaggataatttggtaaa 44257689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 37559629 - 37559553
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaata 151  Q
    |||| |||| ||||||||||| ||||||| | ||||||||||||| |||||||| |||||||| |||||||||||||    
T  37559629 ttgtaccctccaattaatactctgcacactattttcaaagtattacttttaaaactaaccaatagttaataagaata 37559553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 15160468 - 15160423
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  15160468 ataatttggtaaaataaccattctctttcttttaatcattgcattt 15160423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 39765951 - 39765870
Alignment:
Q  80 cccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| ||||||||||| ||||||| | || |||||||||| |||||||| |||||||| ||||||||| ||| |||||||||    
T  39765951 ccctccaattaatactctgcacactacttccaaagtattacttttaaaactaaccaatagttaataaggataatttggtaaa 39765870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 43724512 - 43724559
Alignment:
Q  177 aataatttggtaaaataacaattctctttcttttaatcattgcatttt 224  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||    
T  43724512 aataatttggtaaaataatcattctctttcttttaatcattgcatttt 43724559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 15160542 - 15160456
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| ||||||| | || |||| ||||| |||||||| |||||||| ||||||||| ||| |||||||||    
T  15160542 ttgtaccctccaattaatactctgcacactacttccaaaatattacttttaaaactaaccaatagttaataaggataatttggtaaa 15160456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 396236 - 396191
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||  |||||||||||||||||||||||||||    
T  396236 ataatttggtaaaataatcattctctttcttttaatcattgcattt 396191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 1511632 - 1511677
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    ||||||| ||||||| ||||||||||||||| ||||||||||||||    
T  1511632 ataatttagtaaaatgacaattctctttcttataatcattgcattt 1511677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 17655969 - 17656050
Alignment:
Q  80 cccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| ||||||||||| ||||||| | || |||||||||| |||||||| ||||||||   ||||||| ||| |||||||||    
T  17655969 ccctccaattaatactctgcacactacttgcaaagtattacttttaaaactaaccaataactaataaggataatttggtaaa 17656050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 39765882 - 39765837
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||  |||||||||||||||||||||| ||||    
T  39765882 ataatttggtaaaataagcattctctttcttttaatcattgtattt 39765837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 12339853 - 12339898
Alignment:
Q  176 gaataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    ||||||||| |||||||||||||||||  |||||||||||||||||||    
T  12339853 gaataattttgtaaaataacaattctc--tcttttaatcattgcattt 12339898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 43724449 - 43724525
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    ||||||||||| ||||||| | || || | ||||| |||||||| |||||||| |||||||| |||| |||||||||    
T  43724449 caattaatactctgcacactacttccataatattacttttaaaactaaccaatagttaataaaaataatttggtaaa 43724525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 40362497 - 40362578
Alignment:
Q  80 cccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| ||||||||||| ||||||| |  | |||| ||||| |||||||| |||||||| ||||||||  ||| |||||||||    
T  40362497 ccctccaattaatactctgcacactacgtccaaaatattacttttaaaactaaccaatagttaataaagataatttggtaaa 40362578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 40399889 - 40399844
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||||  ||||||||||||||| | |||||||    
T  40399889 ataatttggtaaaataacatatctctttcttttaattaatgcattt 40399844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 41679453 - 41679498
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||||  ||||||||||||||| | |||||||    
T  41679453 ataatttggtaaaataacacctctctttcttttaattaatgcattt 41679498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 6747283 - 6747369
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| ||||||| | || ||||||||||  ||||||| |||||||||||||||||| ||| |||||||||    
T  6747283 ttgtaccctccaattaatactctgcacactacttccaaagtattacatttaaaactaaccaatggttaataaggataatttggtaaa 6747369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 47187793 - 47187839
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcatttt 224  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  47187793 ataatttggtaaaataacaattctctttcttttaatcaatgcatttt 47187839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 6747357 - 6747402
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  6747357 ataatttggtaaaataaccattctctttcttttaatcattgcattt 6747402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 12977706 - 12977661
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  12977706 ataatttggtaaaataaccattctctttcttttaatcattgcattt 12977661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 12983164 - 12983119
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  12983164 ataatttggtaaaataaccattctctttcttttaatcattgcattt 12983119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 18292466 - 18292511
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  18292466 ataatttggtaaaataaccattctctttcttttaatcattgcattt 18292511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 42285970 - 42286051
Alignment:
Q  80 cccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||||||||||||||||||||||| | || |||||||||| ||||||||   |||||| ||||||||| ||| |||||||||    
T  42285970 cccttcaattaatactatgcacacaacttccaaagtattacttttaaaaccgaccaatagttaataaggataatttggtaaa 42286051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 42286039 - 42286084
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  42286039 ataatttggtaaaataacaattctctttattttaatcattgcattt 42286084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 18292402 - 18292478
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    ||||||||||| ||||||| | || |||||||||| |||||||| |||||||| ||||||||| ||| |||||||||    
T  18292402 caattaatactctgcacactacttccaaagtattacttttaaaactaaccaatagttaataaggataatttggtaaa 18292478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 31883851 - 31883927
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    ||||||||||| ||||||| | || |||||||||| |||||||| |||||||| ||||||||| ||| |||||||||    
T  31883851 caattaatactctgcacactacttccaaagtattacttttaaaactaaccaatagttaataaggataatttggtaaa 31883927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 2297174 - 2297219
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||  |||||||||||||||||||||||||||    
T  2297174 ataatttggtaaaataatcattctctttcttttaatcattgcattt 2297219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 31883915 - 31883960
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||  |||||||||||||||||||||||||||    
T  31883915 ataatttggtaaaataatcattctctttcttttaatcattgcattt 31883960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 34274925 - 34274970
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||    
T  34274925 ataatttggtaaaataaccattctctttcttttaatcattgtattt 34274970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 37502381 - 37502462
Alignment:
Q  80 cccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| ||||||||||| ||||||| | || |||| ||||| |||||||| |||||||| ||||||||| ||| |||||||||    
T  37502381 ccctccaattaatactctgcacactacttccaaaatattacttttaaaactaaccaatagttaataaggataatttggtaaa 37502462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 2297110 - 2297186
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    ||||||||||| ||||||| | || |||| |||||||||||||| |||||||| ||||||||  ||| |||||||||    
T  2297110 caattaatactctgcacactacttccaaaatattatttttaaaactaaccaatagttaataaagataatttggtaaa 2297186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 12977770 - 12977694
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    ||||||||||| ||||||| | || |||||||||| |||||||| |||| ||| ||||||||| ||| |||||||||    
T  12977770 caattaatactctgcacactacttccaaagtattacttttaaaactaactaatagttaataaggataatttggtaaa 12977694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 31929954 - 31929882
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataag 147  Q
    |||| |||| ||||||||||| ||||||| | || |||||||||| |||||||| |||||||| |||||||||    
T  31929954 ttgtaccctccaattaatactttgcacactacttccaaagtattacttttaaaactaaccaatagttaataag 31929882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 44567125 - 44567049
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    ||||||||||| ||||||| | || |||||||||| |||||||| |||||||| ||||||||| ||| |||| ||||    
T  44567125 caattaatactttgcacactacttccaaagtattacttttaaaactaaccaatagttaataaggataatttgataaa 44567049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 715957 - 715871
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| ||| ||| | || |||||||||| |||||||| |||||||| | ||||||| ||| |||||||||    
T  715957 ttgtaccctccaattaatactctgctcactacttccaaagtattacttttaaaactaaccaatagctaataaggataatttggtaaa 715871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 715883 - 715838
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||  ||| |||||||||||||||||||||||    
T  715883 ataatttggtaaaataatgattttctttcttttaatcattgcattt 715838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 18270709 - 18270754
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||  ||||| |||||||||||||||||||||    
T  18270709 ataatttggtaaaataatcattctatttcttttaatcattgcattt 18270754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 31196627 - 31196676
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattattttt 124  Q
    ||||||||||||||||||| |||  |||| ||||||||||||||||||||    
T  31196627 ttgtgcccttcaattaatattatatacactaatttcaaagtattattttt 31196676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 37502450 - 37502495
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||  |||||||||||||||||||||| ||||    
T  37502450 ataatttggtaaaataatcattctctttcttttaatcattgtattt 37502495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 40339600 - 40339645
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    ||||||||||||||||||| |||||||||||||||| | |||||||    
T  40339600 ataatttggtaaaataacatttctctttcttttaattaatgcattt 40339645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 7900070 - 7900116
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcatttt 224  Q
    |||||||||||||||||| |||||| ||| ||||||||||| |||||    
T  7900070 ataatttggtaaaataactattctcattcatttaatcattgtatttt 7900116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 19303404 - 19303358
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcatttt 224  Q
    ||||||| ||||||||||| |||||||||||||||| | ||||||||    
T  19303404 ataatttagtaaaataacatttctctttcttttaattaatgcatttt 19303358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 34274851 - 34274937
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| | ||||| |  | |||||||||| |||||||| |||||||| ||||||||  ||| |||||||||    
T  34274851 ttgtaccctccaattaatactctacacactacatccaaagtattacttttaaaactaaccaatagttaataaagataatttggtaaa 34274937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 4268794 - 4268839
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||||  ||||||||||||||| | |||||||    
T  4268794 ataatttggtaaaataacatctctctttcttttaattaatgcattt 4268839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 25441003 - 25441048
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    ||||||| |||||||||  ||||||||||||||||||||| |||||    
T  25441003 ataatttagtaaaataatcattctctttcttttaatcattacattt 25441048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 31929875 - 31929834
Alignment:
Q  182 tttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||  ||||||||||| |||||||||||||||    
T  31929875 tttggtaaaataaacattctctttctgttaatcattgcattt 31929834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 35765922 - 35765876
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcatttt 224  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  35765922 ataatttggtaaaataaccattctctttcttttaatcattgcatttt 35765876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 7317159 - 7317204
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  7317159 ataatttggtaaaataaccattctctttcttttaatcattgcattt 7317204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 10344954 - 10344909
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  10344954 ataatttggtaaaataaccattctctttcttttaatcattgcattt 10344909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 32158673 - 32158718
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  32158673 ataatttggtaaaataaccattctctttcttttaatcattgcattt 32158718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 43584467 - 43584386
Alignment:
Q  80 cccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| ||||||||||| ||||||| | || |||| ||||| ||||||||||||||||| ||||||||| ||| |||||||||    
T  43584467 ccctccaattaatactctgcacactacttccaaaatattacttttaaaattaaccaatagttaataaggataatttggtaaa 43584386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 7317085 - 7317171
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| |||| || | ||||||||||||| |||||||| ||| |||| ||||||||| ||| |||||||||    
T  7317085 ttgtaccctccaattaatactctgcaaactattttcaaagtattacttttaaaactaatcaatagttaataaggataatttggtaaa 7317171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 10345028 - 10344942
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| ||||||| | || |||||||||| |||||||| |||||||| | ||||||| ||| |||||||||    
T  10345028 ttgtaccctccaattaatactctgcacactacttccaaagtattacttttaaaactaaccaatagctaataaggataatttggtaaa 10344942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 3024953 - 3024908
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||    
T  3024953 ataatttggtaaaataaccattctctttcttttaatcgttgcattt 3024908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 25362891 - 25362810
Alignment:
Q  80 cccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| ||||||||||| ||||||| | || |||||||||| |||||||| || ||||| ||||||||| ||| |||||||||    
T  25362891 ccctccaattaatactctgcacactacttccaaagtattacttttaaaactagccaatagttaataaggatattttggtaaa 25362810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 35765986 - 35765910
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    ||||||||||| | ||||| ||||  ||||||||| |||||||| |||||||| ||||||||| ||| |||||||||    
T  35765986 caattaatactctacacactaattctaaagtattacttttaaaactaaccaatagttaataaggataatttggtaaa 35765910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 25362818 - 25362777
Alignment:
Q  182 tttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||| ||| |||||||||||||||||||||||||||    
T  25362818 tttggtaaaacaaccattctctttcttttaatcattgcattt 25362777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 43584398 - 43584353
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||  |||||||||||||||||||||| ||||    
T  43584398 ataatttggtaaaataatcattctctttcttttaatcattgtattt 43584353  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 3025027 - 3024941
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| ||||||  | || |||||||||| |||||||| |||| ||| ||||| ||| ||| |||||||||    
T  3025027 ttgtaccctccaattaatactctgcacattacttccaaagtattacttttaaaactaactaatagttaaaaaggataatttggtaaa 3024941  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 13974415 - 13974460
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||||  ||||||||||||||| | |||||||    
T  13974415 ataatttggtaaaataacacctctctttcttttaattaatgcattt 13974460  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 34534416 - 34534465
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattattttt 124  Q
    |||| |||||||||||||||||||||||| | || |||| ||||||||||    
T  34534416 ttgtacccttcaattaatactatgcacactacttccaaaatattattttt 34534465  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 4850517 - 4850472
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  4850517 ataatttggtaaaataaccattctctttcttttaatcattgcattt 4850472  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 29400076 - 29400121
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  29400076 ataatttggtaaaataaccattctctttcttttaatcattgcattt 29400121  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 19689460 - 19689507
Alignment:
Q  177 aataatttggtaaaataacaattctctttcttttaatcattgcatttt 224  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  19689460 aataatttggtaaaataaccattatctttcttttaatcattgcatttt 19689507  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 32429418 - 32429463
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||  |||||||||||||||||||||||||||    
T  32429418 ataatttggtaaaataatcattctctttcttttaatcattgcattt 32429463  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 4850581 - 4850505
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    ||||||||||| ||||||| | || |||| ||||| |||||||| |||||||| ||||||||| ||| |||||||||    
T  4850581 caattaatactctgcacactacttccaaaatattacttttaaaactaaccaatagttaataaggataatttggtaaa 4850505  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 19689394 - 19689473
Alignment:
Q  82 cttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    ||||||||||||||  |||||| | ||| ||||||||| |||||||| ||| |||| |||||||| |||| |||||||||    
T  19689394 cttcaattaatactcagcacactacttttaaagtattacttttaaaactaaacaatagttaataataataatttggtaaa 19689473  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 13503855 - 13503810
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    ||||||||||||||||||| |||||||||||||||| | |||||||    
T  13503855 ataatttggtaaaataacatttctctttcttttaattaatgcattt 13503810  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 13597965 - 13597932
Alignment:
Q  178 ataatttggtaaaataacaattctctttctttta 211  Q
    ||||||||||||||||||||||||||||||||||    
T  13597965 ataatttggtaaaataacaattctctttctttta 13597932  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 1502764 - 1502719
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||||  ||| ||||||||||||| |||||||    
T  1502764 ataatttggtaaaataacatctctatttcttttaatcaatgcattt 1502719  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 13011359 - 13011314
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||||  ||||||||||||||| | |||||||    
T  13011359 ataatttggtaaaataacatctctctttcttttaattaatgcattt 13011314  T

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Target: scaffold0332 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 3906 - 3820
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatggttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| ||||||| | || |||||||||| |||||||| |||||||| | ||||||| ||| |||||||||    
T  3906 ttgtaccctccaattaatactctgcacactacttccaaagtattacttttaaaactaaccaatagctaataaggataatttggtaaa 3820  T

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Target: scaffold0332; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 3832 - 3787
Alignment:
Q  178 ataatttggtaaaataacaattctctttcttttaatcattgcattt 223  Q
    |||||||||||||||||  ||| |||||||||||||||||||||||    
T  3832 ataatttggtaaaataatcattttctttcttttaatcattgcattt 3787  T

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Target: scaffold0565 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 296
Target Start/End: Complemental strand, 9913 - 9877
Alignment:
Q  260 tatgtgtaaaaactttaaacgataatcattttgaaac 296  Q
    |||||||||||||||||||||| | ||||||||||||    
T  9913 tatgtgtaaaaactttaaacgacattcattttgaaac 9877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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