View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_125 (Length: 317)
Name: NF11557A_low_125
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_125 |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 299
Target Start/End: Original strand, 4821758 - 4822043
Alignment:
| Q |
14 |
gaagaaacgtatatgaagttcttgcgtaattaacgatgttttgtgacttgtgattgtttagccgtataaaagtttgctttgacggtgtatcaaaattaaa |
113 |
Q |
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| T |
4821758 |
gaagaaacgtatatgaagttcttgcgtaattaacgatgttttgtgacttgtgattgtttagccgaataaaagtttgctttgatggtgtatcaaaattaaa |
4821857 |
T |
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| Q |
114 |
cttgttatttattattatatctccatggctagacttttggaaaataagcaatctgattatgaactcgtgatatgaagaaaaagaagctttgcagcctgca |
213 |
Q |
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| T |
4821858 |
cttgttatttattattatatctccgtggctagacttttggaaaataagcaatctgattatgaactcgtgataagaagaaaatgaagctttgcagcctgca |
4821957 |
T |
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| Q |
214 |
atcagcaccaccattgtattatccaatacttccatcgtcgcgacccccgccatcggcagctgcttgtgcccctgccaggaccacct |
299 |
Q |
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| T |
4821958 |
atcagcaccaccattgtattatccaatacttccatcgtcgcgacccccgccatcggcagctgcttgtgccccttccaggaccacct |
4822043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 4811922 - 4812010
Alignment:
| Q |
159 |
aagcaatctgattatgaactcgtgatatgaagaaaaagaagctttgcagcctgcaatcagcaccaccattgtattatccaatacttccat |
248 |
Q |
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| T |
4811922 |
aagcaatctgatt-tgaactcgtgataagaagaaaaagaagctttgcagcctgcaatcagcaccaccattgtattatccaatacttccat |
4812010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 4811820 - 4811893
Alignment:
| Q |
81 |
aaaagtttgctttgacggtgtatcaaaattaaacttgttatttattattatatctccatggctagacttttgga |
154 |
Q |
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| T |
4811820 |
aaaagtttactttgacggtgtatcaaaattaaacttgttatttattattatatttccatggcttgacttttgga |
4811893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 4865385 - 4865435
Alignment:
| Q |
159 |
aagcaatctgattatgaactcgtgatatgaagaaaaagaagctttgcagcct |
210 |
Q |
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| T |
4865385 |
aagcaatctgattatgaactcgtgataagaa-aaaaagaagctttgcagcct |
4865435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 4865303 - 4865356
Alignment:
| Q |
101 |
tatcaaaattaaacttgttatttattattatatctccatggctagacttttgga |
154 |
Q |
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| T |
4865303 |
tatcaaaattaaactcgttatttattattatatttccatggccagacttgtgga |
4865356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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