View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_129 (Length: 311)
Name: NF11557A_low_129
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_129 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 8e-92; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 24 - 295
Target Start/End: Complemental strand, 8692874 - 8692602
Alignment:
| Q |
24 |
attgtttgagagttatgtttggctaaggaagactctatgaagagtgagaggaaaatgactagtgatgtgagaatgaattttagtgccattttgtgttaca |
123 |
Q |
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| T |
8692874 |
attgtatgagagttatgtttggctagggtggattcaaaaaggagtgagaggaaaatgactagtgatgttagaatgagttttggtgccattttgggtttca |
8692775 |
T |
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| Q |
124 |
attgaaccttgtttagattggttagttaaatgtgatatgatggaagaagagaatttccaaagctcaaatttgatgaaaatgctaatgggttttgttactt |
223 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
8692774 |
attgaaccttgtttagatatgttacttaaatgtgatatgatgaaagaagagaatttccaaagctcaaa-ttgatgaaaatgctaatgggttttgttattt |
8692676 |
T |
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| Q |
224 |
atat--agagttcccacatgcaaattttttgggtcaaacccccacatacaatttatgcttagctattttgtttc |
295 |
Q |
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| T |
8692675 |
atatagagagttcccacatgcaagttttttgggtcaaacccccacatacaatttatgcttaactattttgtttc |
8692602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 136 - 295
Target Start/End: Original strand, 8696487 - 8696646
Alignment:
| Q |
136 |
ttagattggttagttaaatgtgatatgatggaagaagagaatttccaaagctcaaatttgatgaaaatgctaatgggttttgttacttatatagagttcc |
235 |
Q |
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| T |
8696487 |
ttagataggttacttaaatgtgatatgatgaaagaagagaatttccaaagctcaaatttgatgaaaatgctaatgggttttgttacttatatagagttcc |
8696586 |
T |
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| Q |
236 |
cacatgcaaattttttgggtcaaacccccacatacaatttatgcttagctattttgtttc |
295 |
Q |
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| T |
8696587 |
cacatgcaaattttttgggtcaaatccccacatacaatttatgcttagctattttgtttc |
8696646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 8674648 - 8674446
Alignment:
| Q |
19 |
agtttattgtttgagagttatgtttggctaaggaagactctatgaagagtgagaggaaaatgactagtgatgtgagaatgaattttagtgccattttgtg |
118 |
Q |
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| T |
8674648 |
agtttattgtttgagagttatgtttggctagggaggactctaagaaaagtgagaggaaaatgactagtgatgtgagaatgaatttttgtgccattttgtg |
8674549 |
T |
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| Q |
119 |
ttacaattgaaccttgtttagattggttagttaaatgtgatatgatggaagaagaga-atttccaaagctcaaatttgatgaaaatgctaatgggttttg |
217 |
Q |
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| T |
8674548 |
ttacaattgaacctt-----ggttggtt-----aatgtgatatgatggaagaagagagcttttcaatgctcaagtttgatgaaaatgctaatggggtgtg |
8674459 |
T |
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| Q |
218 |
ttacttatataga |
230 |
Q |
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||||||| ||||| |
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| T |
8674458 |
ttacttaaataga |
8674446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 8687823 - 8687938
Alignment:
| Q |
24 |
attgtttgagagttatgtttggctaaggaagactctatgaagagtgagaggaaaatgactagtgatgtgagaatgaattttagtgccattttgtgttaca |
123 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||| |
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| T |
8687823 |
attgtttgagtgttatgtttggctaaggaagactctatgaagagtgagaggaaaatgattagtgatgtgagaatgaatttttgttccattttgtgttaca |
8687922 |
T |
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| Q |
124 |
attgaaccttgtttag |
139 |
Q |
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||||||||||| |||| |
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| T |
8687923 |
attgaaccttggttag |
8687938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 152 - 295
Target Start/End: Complemental strand, 8678539 - 8678383
Alignment:
| Q |
152 |
aatgtgatatgatggaagaagagaatttccaaagctcaaatttgatgaaaatgctaatgggttttgttacttatatagag-------------ttcccac |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||| |
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| T |
8678539 |
aatgtgatatgatggaagaagagaatttccaaagctcaaatttgatgaaaatgctaatggggtttgttgcttatatagagatttcctaacatattcccac |
8678440 |
T |
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| Q |
239 |
atgcaa-attttttgggtcaaacccccacatacaatttatgcttagctattttgtttc |
295 |
Q |
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| T |
8678439 |
atgcaatatttttttggtcaaatccccacatgcaa-ttatgcttagctattttgtttc |
8678383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 8696387 - 8696472
Alignment:
| Q |
19 |
agtttattgtttgagagttatgtttggctaaggaagactctatgaagagtgagaggaaaatgactagtgatgtgagaatgaatttt |
104 |
Q |
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|||||||||||||||||||||||||||||| || || | | || |||||||||||||||||||| ||||| ||||||| |||| |
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| T |
8696387 |
agtttattgtttgagagttatgtttggctagggtggatttaaagaggagtgagaggaaaatgactaatgatgctagaatgagtttt |
8696472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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