View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_135 (Length: 305)
Name: NF11557A_low_135
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_135 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 11821730 - 11822028
Alignment:
| Q |
1 |
accggagagtcttttggataggaatcttaattccgcgacattcggtaagagaaaatctgattatgttcagaaagctatttcaaaagatgatttggaaggg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11821730 |
accggagagtcttttggataggaatcttaattccgcggctttcggtaagaggaaatctgattatgttcagaaagctatttcaaaagatgatttggaaggg |
11821829 |
T |
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| Q |
101 |
atttggaaaaagatgattgagttgggaaaagttggatttgttttcaacccttatggtggaaaaatggctcagattccggccgatgcaacgccatttcctc |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11821830 |
atatggaaaaagatgattgagttgggaaaagttggatttgttttcaacccttatggtggaaaaatggctgagattccggccgatgcaacgccatttcctc |
11821929 |
T |
|
| Q |
201 |
accgtgccggaaatttgttcaaaattcaattctcagtgaattggaatgatccagcacctaatgcaacagttggttttttgaatcaagctaaggtacttt |
299 |
Q |
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| T |
11821930 |
accgtgccgggaatttgttcaaaattcaattctcagtgaattggaatgatccagcacctaatgcaacagttggttttttgaatcaagctaaggtacttt |
11822028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 11834634 - 11834337
Alignment:
| Q |
1 |
accggagagtcttttggataggaatcttaattccgcgacattcggtaagagaaaatctgattatgttcagaaagctatttcaaaagatgatttggaaggg |
100 |
Q |
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||||| || |||||||||||||||| ||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11834634 |
accggtgaatcttttggataggaatgttaattcggcgggtttaggtaagagaaaatctgattatgttcagaaagctatttcaaaagatgatttggaaggg |
11834535 |
T |
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| Q |
101 |
atttggaaaaagatgattgagttgggaaaagttggatttgttttcaacccttatggtggaaaaatggctcagattccggccgatgcaacgccatttcctc |
200 |
Q |
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|| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
11834534 |
atatggaaaaagatgattgagttaggaaaaattggatttgttttcaacccttatggtggaaaaatcgctgagattccggccgatgcaacgccatttcctc |
11834435 |
T |
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| Q |
201 |
accgtgccggaaatttgttcaaaattcaattctcagtgaattggaatgatccagcacctaatgcaacagttggttttttgaatcaagctaaggtactt |
298 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11834434 |
accgtgctggaaatttgttcaaaattcaatattcagtgaattgggatgatccatcacctaatgcaacagttggttttttgaatcaagctaaggtactt |
11834337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 167
Target Start/End: Original strand, 11918121 - 11918241
Alignment:
| Q |
47 |
aagagaaaatctgattatgttcagaaagctatttcaaaagatgatttggaagggatttggaaaaagatgattgagttgggaaaagttggatttgttttca |
146 |
Q |
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|||||||||||||||||||| || || | ||||| ||||| | ||||||||| ||||||||||||||||| ||||||| ||||| || | | |||||| |
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| T |
11918121 |
aagagaaaatctgattatgtaaaggaaccaatttctaaagagggtttggaaggaatttggaaaaagatgatcgagttggaaaaaggtgtaatgtttttca |
11918220 |
T |
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| Q |
147 |
acccttatggtggaaaaatgg |
167 |
Q |
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| ||||||||||||||||||| |
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| T |
11918221 |
atccttatggtggaaaaatgg |
11918241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 11947572 - 11947606
Alignment:
| Q |
91 |
tttggaagggatttggaaaaagatgattgagttgg |
125 |
Q |
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|||||||||||||||||||||||||||| |||||| |
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| T |
11947572 |
tttggaagggatttggaaaaagatgattaagttgg |
11947606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 47 - 166
Target Start/End: Original strand, 38126088 - 38126207
Alignment:
| Q |
47 |
aagagaaaatctgattatgttcagaaagctatttcaaaagatgatttggaagggatttggaaaaagatgattgagttgggaaaagttggatttgttttca |
146 |
Q |
| |
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||||| |||||||||||||| |||| | ||||||||||||| ||||||||||| | || ||| ||||||| ||||||||||| ||||| ||||| |
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| T |
38126088 |
aagaggaaatctgattatgtggagaatccaatttcaaaagatgggttggaagggatatataagaagctgattgaattgggaaaagtaggattgactttca |
38126187 |
T |
|
| Q |
147 |
acccttatggtggaaaaatg |
166 |
Q |
| |
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||||||| |||||||||||| |
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| T |
38126188 |
acccttacggtggaaaaatg |
38126207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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