View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_138 (Length: 302)
Name: NF11557A_low_138
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_138 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 295
Target Start/End: Complemental strand, 26734597 - 26734318
Alignment:
| Q |
14 |
agagagaaaatatttgtcccataaccataacttagttgacagggacattgtattttatatgtaggacgtgttcaaatctaaattctccacttattcannn |
113 |
Q |
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| T |
26734597 |
agagagaaaatatttgtcccatgaccataacttagttggtagaaacattgtattttacatgtaggacgtgttcaaatccagattctcctcttattcattt |
26734498 |
T |
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| Q |
114 |
nnnnnnnnncaacgacaaattttatttattagcaacgacacaagacgtgacaagaactaaataatacaacattggaaaaaacacccagaggccaaaaagg |
213 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26734497 |
ttttttt--caacgacaaattttatttattagcatcgacagaagacgtgacaagaactatataatacaacattggaaaaaacacccagaggccaaaaagg |
26734400 |
T |
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| Q |
214 |
aggcgcatccataaacagctaaacaacctaaaaggtactcactatactaatcaccaccacagtaacattatcccttacacag |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
26734399 |
aggcgcatccataaacagctaaacaacctaaaaggtactcactatactaatcaccaccataataacattatcccttacacag |
26734318 |
T |
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