View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_139 (Length: 300)
Name: NF11557A_low_139
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_139 |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 55 - 191
Target Start/End: Original strand, 15827214 - 15827348
Alignment:
| Q |
55 |
tttaggtgatctatgattgcatttgagataagactatacctttttacttgacacttgatatgcctcaatacttctgctgatagacaagctagactattgt |
154 |
Q |
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| T |
15827214 |
tttaggtgatctatgattgcatt-gagataagactatacctttttacttgacacctgatatgcctcaatacttctgctgatagacaagctagactcttgt |
15827312 |
T |
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| Q |
155 |
gatttcttcatgaaattgttaaagcatatgagtcaag |
191 |
Q |
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| T |
15827313 |
gatttcttcatgaaattgtt-aagcatatgagtcaag |
15827348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 15827495 - 15827599
Alignment:
| Q |
184 |
gagtcaagtgtatggtttctctcataaaaaatttcattttgaacattgggatatgactcgcaagtggaatttcttatgatataaccaacattttgtattt |
283 |
Q |
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| T |
15827495 |
gagtcaagtgtatggtttctctcataaaaaatttcattttgaacattgggatatgactcgcaagtggaatttctcatgatataaccaacattttgtattt |
15827594 |
T |
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| Q |
284 |
tgatg |
288 |
Q |
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| T |
15827595 |
tgatg |
15827599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 5600674 - 5600618
Alignment:
| Q |
46 |
tcttctctttttaggtgatctatgattgcatttgagataagactatacctttttactt |
103 |
Q |
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| T |
5600674 |
tcttctctttttaggtgatctatgattaca-ttgagatgagactctatgtttttactt |
5600618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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