View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_14 (Length: 483)
Name: NF11557A_low_14
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 13 - 482
Target Start/End: Complemental strand, 26609861 - 26609392
Alignment:
| Q |
13 |
agatgtcatgttcaaggtaggattaggcagccacgatgaaaacaaatctgaagacttttgtgagctgtatagatccatctccatcgtatcattccctaat |
112 |
Q |
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| T |
26609861 |
agatgtcatgttcaaggtaggattaggcagccacgatgaaaacaaatctgaagacttttgtgagctgtatagatccatctccatcgtatcattccctaat |
26609762 |
T |
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| Q |
113 |
gaatcatgtcattaactaacaaatgctaatgtcaagctaatatcttacttattttattactaatggtagaccattatcttgtccacaagccaaagaatga |
212 |
Q |
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| T |
26609761 |
gaatcatgtcattaactaacaaatgctaatgtcaagctaatatcttacttattttattactaatggtagaccattatcttgtccacaagccaaagaatga |
26609662 |
T |
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| Q |
213 |
gaatcacaaagtcactcctcctggcactgaattgtcaagaccttttcaagaatgatttcttttcattggtcttagttggatcatacacgtttggcactcc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26609661 |
gaatcacaaagtcactcctcctggcactgaattgtcaagaccttttcaagaatgatttcttttcattggtcttagttggatcatacacgtttggcactcc |
26609562 |
T |
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| Q |
313 |
tccttttgttgctgaccttggctttaatgatcatatacagttaatttttatatatttcaaagtatcataatcattgttagcttattatatgacattcatc |
412 |
Q |
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| T |
26609561 |
tccttttgttgctgaccttggctttaatgatcatatacagttaatttttatatatttcaaagtatcataatcattgttagcttgttatatgacattcatc |
26609462 |
T |
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| Q |
413 |
ggattagacatgttcgggtgtcggacgcgtgtcatgttcaacagcgacacgacaccgacacaaatagttg |
482 |
Q |
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| T |
26609461 |
ggattagacatgttcggatgtcggacgcgtgtcgtgttcaacagcgacacgataccgacacaaatagttg |
26609392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 473
Target Start/End: Complemental strand, 3209498 - 3209436
Alignment:
| Q |
411 |
tcggattagacatgttcgggtgtcggacgcgtgtcatgttcaacagcgacacgacaccgacac |
473 |
Q |
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||||||||| | ||| ||||||||||||||||||| ||||| ||| |||||||||||||||| |
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| T |
3209498 |
tcggattaggcgtgtccgggtgtcggacgcgtgtcgtgttcgacactgacacgacaccgacac |
3209436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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