View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_146 (Length: 297)
Name: NF11557A_low_146
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_146 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 8 - 276
Target Start/End: Original strand, 34806030 - 34806298
Alignment:
| Q |
8 |
aatcaaagaaaagaaagatgaagcaaatagtttcttcaatttcaaatcaaacaaaaaaccaatctcagaaaataatcatcatcactaaccttattgtttt |
107 |
Q |
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| T |
34806030 |
aatcaaagaaaagaaagatgaagcaaatagtttcttcaatttcaaatcaaacaaaaaaccaatctcagaaaataatcatcatcactaaccttattgtttt |
34806129 |
T |
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| Q |
108 |
cagcaactgctgctgcttgtgcattggcaagtagttgtgcacaaaaactccttgtgacggggcgatttggcttgacttcaacacctttcagtgtgacaac |
207 |
Q |
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| T |
34806130 |
cagcaactgctgctgcttgtgcattggcaagtagttgtgcacaaaaactcctagtgacggggcgatttggcttgacttcgacacccttcagtgtgacaac |
34806229 |
T |
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| Q |
208 |
attaccaatatcaacaagtggtctacggttccttccttcccctgctgcaccgttcttcttctgctgttt |
276 |
Q |
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| T |
34806230 |
attaccaatatcaacaagtggtctacggttccttccttcccctgctgcaccgttcttcttctgctgttt |
34806298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 34805957 - 34806008
Alignment:
| Q |
37 |
gtttcttcaatttcaaatcaaacaaaaaaccaatctcagaaaataatcatca |
88 |
Q |
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| T |
34805957 |
gtttcttcaatttcaaatcaaacagaaaaccaatctcagaaaacaatcatca |
34806008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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