View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_150 (Length: 295)
Name: NF11557A_low_150
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_150 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 290
Target Start/End: Original strand, 31791270 - 31791551
Alignment:
| Q |
9 |
gaaatgaaatataacctgatctgccttctagcttttcagctataagattccagttctgaggaccataaagagcaacaagttctttaagcttagaatcttc |
108 |
Q |
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| T |
31791270 |
gaaatgaaatataacctgatctgccttctagcttttcagctatgagattccagttctgaggaccataaagagcaacaagttctttaagcttagaatcttc |
31791369 |
T |
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| Q |
109 |
cgcaggtctccaatgacctcttgcacaaagtttagagtgaccagtatctacctctttaccactgacataactattctcattagggttatcttcattaagg |
208 |
Q |
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| T |
31791370 |
tgcaggtctccaatgacctcttgcacaaagtttagagtgaccagtatctacctctttaccactgacataactattctcattagggttatcttcattaagg |
31791469 |
T |
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| Q |
209 |
ttaatttttccactgttttctccaacatcaccaccagaatcagaaccattaccttccccaccatcatcactgttgttgtttt |
290 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31791470 |
ttaattttttcactgttttctccaacatcaccaccagaatcagaaccatcaccttccccaccatcatcactgttgttgtttt |
31791551 |
T |
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Target: chr5 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 22 - 135
Target Start/End: Original strand, 18246069 - 18246182
Alignment:
| Q |
22 |
acctgatctgccttctagcttttcagctataagattccagttctgaggaccataaagagcaacaagttctttaagcttagaatcttccgcaggtctccaa |
121 |
Q |
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||||||||| ||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| |
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| T |
18246069 |
acctgatcttccttccaacttttcagctataagattccagttttgaggaccataaagagcaacaagttctttaagcttggaatcttcagcaggcctccaa |
18246168 |
T |
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| Q |
122 |
tgacctcttgcaca |
135 |
Q |
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| T |
18246169 |
tgccctcttgcaca |
18246182 |
T |
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Back To:
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 146
Target Start/End: Original strand, 33826154 - 33826278
Alignment:
| Q |
22 |
acctgatctgccttctagcttttcagctataagattccagttctgaggaccataaagagcaacaagttctttaagcttagaatcttccgcaggtctccaa |
121 |
Q |
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||||||||| ||||| || | ||| ||||| | ||||| || ||||||||||| ||||||||| || ||||| |||| |||||| ||||||||| |
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| T |
33826154 |
acctgatcttccttcaagatgttctgctatcaagttccaattttgaggaccatattcagcaacaagctccttaagtttagcatcttctattggtctccaa |
33826253 |
T |
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| Q |
122 |
tgacctcttgcacaaagtttagagt |
146 |
Q |
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|||||||| | |||||| ||||||| |
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| T |
33826254 |
tgacctctagaacaaagcttagagt |
33826278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 9360069 - 9360021
Alignment:
| Q |
81 |
caacaagttctttaagcttagaatcttccgcaggtctccaatgacctct |
129 |
Q |
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||||||||| ||||||||||| |||||| | ||||||||||||||||| |
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| T |
9360069 |
caacaagttttttaagcttagcatcttcagatggtctccaatgacctct |
9360021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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