View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_153 (Length: 290)
Name: NF11557A_low_153
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_153 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 2093166 - 2093443
Alignment:
| Q |
1 |
atcggctatttctttcttctccaagacaagaggtgcactctttctaggggttccaattgttttgtcgagattttcttaaaagtttcactaatttagtgaa |
100 |
Q |
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| T |
2093166 |
atcggctatttctttcttctccaaaacaagaggtgcactctttctagaggttccaattgttttgtcgagattttcttaaaagtttcattaatttagtgaa |
2093265 |
T |
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| Q |
101 |
ataaaggagagaacctcaaaacatttggaaccgctaacaaagagaagcaattgaagacacttgtggaatggaaatagtctccccatgatagtattttgga |
200 |
Q |
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| T |
2093266 |
acaagggagaaaacctcaaaacacttggaaccactaacaaagagaaacgattgaagacacttgcggaatggaaatagtctccatatgatagtattttgga |
2093365 |
T |
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| Q |
201 |
ctcaaccaaacaataggtgggaaatgttaaactcaatttccaaaatgtaagcacctctttgattagtatgcaacatct |
278 |
Q |
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| T |
2093366 |
ctcaaccaaacagtaggtgggaaatgttaaactcaatttccaaaatgtaagcatctctttgatcagtatgcaacatct |
2093443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 2081046 - 2081091
Alignment:
| Q |
203 |
caaccaaacaataggtgggaaatgttaaactcaatttccaaaatgt |
248 |
Q |
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| T |
2081046 |
caaccaaacaacaggtgagaaatgttaaacttgatttccaaaatgt |
2081091 |
T |
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