View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_154 (Length: 289)
Name: NF11557A_low_154
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_154 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 6 - 271
Target Start/End: Original strand, 14559903 - 14560168
Alignment:
| Q |
6 |
acctctcttgtaatcacttggtgggaaaaatacaaactggaacacacatttaatcatttcaagaagattcatttataggcaatgaagagctgtgtggacc |
105 |
Q |
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| T |
14559903 |
acctctcttgtaatcacttggtgggaaaaatacaaactggaacacacatttaatcatttcaagaagattcatttataggcaatgaagagttgtgtggacc |
14560002 |
T |
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| Q |
106 |
tccactgatacaaaactgtggtggtgaaggagggaaaagcttgtcacaacaaacatatgaaatacgttattatcatgaaaggagtttaattgattggaat |
205 |
Q |
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| T |
14560003 |
tccactgacacaaaactgtggtggtgaaggagggaaaagcttgtcacaacaagcatatgaaacacgttattatcatgaaaggagtttaattgattgaaat |
14560102 |
T |
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| Q |
206 |
ttcttaaatgttgaggtgggattcacttttggttttagagcttttttcattcctcttattttcttg |
271 |
Q |
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| T |
14560103 |
ttcttaagtgttgaggtgggattcacttttggttttagagtttttttccttcctcttattttcttg |
14560168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 6 - 233
Target Start/End: Original strand, 14569658 - 14569885
Alignment:
| Q |
6 |
acctctcttgtaatcacttggtgggaaaaatacaaactggaacacacatttaatcatttcaagaagattcatttataggcaatgaagagctgtgtggacc |
105 |
Q |
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| T |
14569658 |
acctctcttgtactcatttggtgggaaaaataccacctggaacacaaattcaatcatttcaagaagattcacttataggtaataaagagttgtgtggacc |
14569757 |
T |
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| Q |
106 |
tccactgatacaaaactgtggtggtgaaggagggaaaagcttgtcacaacaaacatatgaaatacgttattatcatgaaaggagtttaattgattggaat |
205 |
Q |
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| T |
14569758 |
tccactgacacaaaattgtgttggtgaaggagggaaaagcttgtaacaacaagcatatgaaacaccttattttcacgacaggggttcaattgattagaat |
14569857 |
T |
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| Q |
206 |
ttcttaaatgttgaggtgggattcactt |
233 |
Q |
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| T |
14569858 |
ttcttaagtgttgagttggaattcactt |
14569885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 32549283 - 32549371
Alignment:
| Q |
20 |
cacttggtgggaaaaatacaaactggaacacacatttaatcatttcaagaagattcatttataggcaatgaagagctgtgtggacctcc |
108 |
Q |
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| T |
32549283 |
cacttggtgggaagaataccaactgggacacagattcaatcatttcaagcagattcatttattggcaatgaagggctatttggacctcc |
32549371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 32549451 - 32549498
Alignment:
| Q |
194 |
attgattggaatttcttaaatgttgaggtgggattcacttttggtttt |
241 |
Q |
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| T |
32549451 |
attgattggaatttcttgagtgctgagttgggattcacttttggtttt |
32549498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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