View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_159 (Length: 288)
Name: NF11557A_low_159
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_159 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 283
Target Start/End: Complemental strand, 30888677 - 30888410
Alignment:
| Q |
16 |
gcgcacacacacctgcaatggttgaattatcccatcccaccaacaaattcccaagtgtagcagcagttgcaatcataacaatttccctcatgattgttct |
115 |
Q |
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| T |
30888677 |
gcgcacacacacctgcaatggttgaactatcccatcccaccaacaaattcccaagtgtagcagcagttgcaatcataacaatttccctcatgattgttct |
30888578 |
T |
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| Q |
116 |
tggttaataacatagaaaaattaaccaaaccaagaacatactttagattacatgtatatatgttctcaaacaaaacacttagaactattagttagctctg |
215 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30888577 |
tggctaataacatagaaaaattaaccaaaccaagaacatactttagattacttgtatatatgttctcaaacaaaacacttagaactattagttagctctg |
30888478 |
T |
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| Q |
216 |
catcactgtgttccaaatccaataccatgcttaattagaacacctttcgattaaaatgtgcaaatttt |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30888477 |
catcactgtgttccaaatccaataccatgcttaattagaacacctttcgattaaaatgtgcaaatttt |
30888410 |
T |
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