View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11557A_low_16 (Length: 466)
Name: NF11557A_low_16
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_16 |
 | |
|
| [»] scaffold0140 (1 HSPs) |
| | |
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| [»] chr4 (5 HSPs) |
| |
|
| [»] chr1 (5 HSPs) |
| |
|
| [»] scaffold0129 (2 HSPs) |
| | |
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Alignment Details
Target: scaffold0140 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 13 - 463
Target Start/End: Original strand, 35725 - 36176
Alignment:
| Q |
13 |
agaaagacgaaaaagtgcaaagggatgaaattaaaaa-gtcgtaaatatcaaatttttaatttaaaaattgtagttttcatcttcttcttccctctgttt |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||| |
|
|
| T |
35725 |
agaaaaacgaaaaagtgcaaagggatgaaattaaaaaagtcataaatatcaaatttttaatttaaaaactgtagttttcatcttcttcatccttctgttt |
35824 |
T |
|
| Q |
112 |
atttgttctgcatctctcacccactaccttcttcatctttc-tgccaaatttttcatctcacccaatgtcttctcattccattaccaattcatcttcaat |
210 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35825 |
atttgttcagcatctctcacccactaccttcttcatctttcttgccaaa-ttttcatctcatccaatgtcttctcattccattaccaattcatcttcaat |
35923 |
T |
|
| Q |
211 |
tgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35924 |
tgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatg |
36023 |
T |
|
| Q |
311 |
gtgagttattttgtataatactttgtttgttgggtattttcgcacactttaatgtaattaaaagatgtgtatggttgattttgtttttaggatcctaata |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36024 |
gtgagttattttgtataatactttgtttgttgggtattttggcacactttaatgtaattaaaagatgtgtatggttgattttgtttttagggtcctaata |
36123 |
T |
|
| Q |
411 |
gttgcaagttgttcatatgggatgatgaaattgatggacatcctccatatgtt |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36124 |
gttgcaagttgttcatatgggatgatgaaattgatggacatcctccatatgtt |
36176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 23 - 466
Target Start/End: Original strand, 13506975 - 13507422
Alignment:
| Q |
23 |
aaaagtgcaaagggatgaaattaaaaagtcgtaaatatcaaatttttaa-tttaaaaattgtagttttcatcttcttcttccctctgtt----tatttgt |
117 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||| |||||| ||| || |||||||| || |||||||||||||| ||||| | || | ||||| |
|
|
| T |
13506975 |
aaaagtgcatagggatgaaattaaaaactcgtaaacatcaaaatttgaaatttaaaaacattatttttcatcttcttcatccctatattgttttttttgt |
13507074 |
T |
|
| Q |
118 |
tctgcatctctcacccactaccttcttcatctttctgccaaatttttcatctcacccaatgtcttctcattccattaccaattcatcttcaattgaaatg |
217 |
Q |
| |
|
||| ||||| ||||||| | ||||||||||||||| |||| || |||||||| ||||||||||||| |||||||||| ||||||||||||||||| || |
|
|
| T |
13507075 |
tcttcatctgtcacccaattccttcttcatctttcaaccaatttcttcatctctcccaatgtcttcttattccattactaattcatcttcaattgag-tg |
13507173 |
T |
|
| Q |
218 |
cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt |
317 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||| |||| | |||||||||||||||| ||||||||||||| |||||||||||||| ||||| |
|
|
| T |
13507174 |
cctatttgtggttgcaacaaagcaatgaatatgtttatctccaatttagttgacaaccctaaaagaagatactggaaatacccaacatttatggcgagtt |
13507273 |
T |
|
| Q |
318 |
attttgtataatactttgtttgttgggtattttcgcacactttaatgtaattaaaagatgtgtatggttgattttgtttttaggatcctaatagttgcaa |
417 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| |||||||||||||||| ||||| | |||||||||| || |
|
|
| T |
13507274 |
attttgtataatactttgtttgttgtgtattttcgcacagtttaatgtaattaaaaaatgtatatggttgattttgttattagggtgctaatagttgtaa |
13507373 |
T |
|
| Q |
418 |
gttgttcatatgggatgatgaaattgatggacatcctccatatgttcgt |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13507374 |
gttgttcatatgggatgatgaaattgatggacatcctccgtatgttcgt |
13507422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 23 - 466
Target Start/End: Complemental strand, 13508268 - 13507827
Alignment:
| Q |
23 |
aaaagtgcaaagggatgaaattaaaaagtcgtaaatatcaaatttttaa-tttaaaaattgtagttttcatcttcttcttccctctgtttatttgttctg |
121 |
Q |
| |
|
||||||||| | ||||||||| ||||| ||||||| |||||| ||| || |||||||| | ||||||||||| | ||||||||| |||||| | |
|
|
| T |
13508268 |
aaaagtgcatatggatgaaataaaaaactcgtaaacatcaaaatttaaaatttaaaaacatgatttttcatcttcatt---cctctgtttttttgttatt |
13508172 |
T |
|
| Q |
122 |
catctctcacccactaccttcttcatctttctgccaaatttttcatctcacccaatgtcttctcattccattaccaattcatcttcaattgaaatgccta |
221 |
Q |
| |
|
||||||||||||| | ||||||||||||||||| ||| || ||||||||||||| ||||||||||||||||||| ||||||| ||||||| | |||||| |
|
|
| T |
13508171 |
catctctcacccaattccttcttcatctttctgtcaatttcttcatctcacccagtgtcttctcattccattactaattcatattcaattaagttgccta |
13508072 |
T |
|
| Q |
222 |
tttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagttattt |
321 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13508071 |
tatgtggttgcaacaaagcaatgaagatgtttatccccaattcaattgacaaccctaaaatgagataatggaaatgcccaacatttatggtgagttattt |
13507972 |
T |
|
| Q |
322 |
tgtataatactttgtttgttgggtattttcgcacactttaatgtaattaaaagatgtgtatggttgattttgtttttaggatcctaatagttgcaagttg |
421 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||| ||||||||| || | |||||||||||||||||||||| | |||||||||| |||||| |
|
|
| T |
13507971 |
tgtataatactttgtttgttgtgtattttcgcacagtttaatataattaaaatatatatatggttgattttgtttttagggtgctaatagttgtaagttg |
13507872 |
T |
|
| Q |
422 |
ttcatatgggatgatgaaattgatggacatcctccatatgttcgt |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13507871 |
ttcatatgggatgatgaaattgatggacatcctctatatgttcgt |
13507827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 42225735 - 42225837
Alignment:
| Q |
176 |
atgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaacc |
275 |
Q |
| |
|
|||||||||||||||||| | |||| |||||||||| || ||| ||| |||||||||||||||| |||| |||||| ||||| ||||||| ||| |||| |
|
|
| T |
42225735 |
atgtcttctcattccattgctaattgatcttcaatttaattgcttatatgtggttgcaacaaaatcatgaggatgttcatctccaattcaaatgaaaacc |
42225834 |
T |
|
| Q |
276 |
cta |
278 |
Q |
| |
|
||| |
|
|
| T |
42225835 |
cta |
42225837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 216 - 305
Target Start/End: Original strand, 28427317 - 28427406
Alignment:
| Q |
216 |
tgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacat |
305 |
Q |
| |
|
||||| ||||||||||||||||||| || |||||| || || ||||||||||| |||||||||| |||||| |||||||||||||||| |
|
|
| T |
28427317 |
tgcctttttgtggttgcaacaaaaccgcgaggatgttcatatccaattcaattgaaaaccctaaaaagagatattggaaatgcccaacat |
28427406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 405 - 462
Target Start/End: Original strand, 28427505 - 28427562
Alignment:
| Q |
405 |
ctaatagttgcaagttgttcatatgggatgatgaaattgatggacatcctccatatgt |
462 |
Q |
| |
|
|||||||||| ||||||| |||||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
28427505 |
ctaatagttgtaagttgtacatatgtgatgatgaaattgaaggacatcccccatatgt |
28427562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 109 - 466
Target Start/End: Original strand, 23573128 - 23573486
Alignment:
| Q |
109 |
tttatttgttctgcatctctcacccactaccttcttcatctttctgccaaatttttcatctcacccaatgtcttctcattccattaccaattcatcttca |
208 |
Q |
| |
|
||||||| |||||||||||||||| || ||| | | || || ||| |||||||||| ||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
23573128 |
tttatttcttctgcatctctcaccaaccacccttataattttcttgcggaatttttcatatcacccaatgtctactcattccatgaccaattcatcttca |
23573227 |
T |
|
| Q |
209 |
attgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacattta |
308 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
23573228 |
actgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaactgagaatcctaaaaggagatactggaaatgcccaacattta |
23573327 |
T |
|
| Q |
309 |
tggtgagttattttgtataatactttgtttgttgggtattttcgcacactttaatgtaattaaaagatgtgtatggttgattttg-tttttaggatccta |
407 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| ||| ||||| |||||| |||||| |||||||| | ||| |
|
|
| T |
23573328 |
tggtgagttattttgtataatactttgattgttgggtaatttcgcaccctttaatgtaaaataaaaatgtggatggtttattttgttttttagggttcta |
23573427 |
T |
|
| Q |
408 |
atagttgcaagttgttcatatgggatgatgaaattgatggacatcctccatatgttcgt |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23573428 |
atagttgcaagttgttcatatgggatgatgaaattgatggacatcctgcatatgttcgt |
23573486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 409 - 466
Target Start/End: Complemental strand, 31815195 - 31815138
Alignment:
| Q |
409 |
tagttgcaagttgttcatatgggatgatgaaattgatggacatcctccatatgttcgt |
466 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31815195 |
tagttgtaagttgtacatatgggatgatgaaattgaaggacatcctccatatgttcgt |
31815138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 218 - 317
Target Start/End: Complemental strand, 31815380 - 31815281
Alignment:
| Q |
218 |
cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt |
317 |
Q |
| |
|
||||| |||||||||||||||| |||| ||||| || || |||||| ||| |||||||||||||||||||||||||||||||| | |||| |||||| |
|
|
| T |
31815380 |
cctatgtgtggttgcaacaaaatcatgagaatgttcatatccaattcacatgaaaaccctaaaaggagatactggaaatgcccaacctatatgatgagtt |
31815281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 279
Target Start/End: Complemental strand, 7384554 - 7384449
Alignment:
| Q |
174 |
caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa |
273 |
Q |
| |
|
||||||||||||||| |||| | ||||||||||||||||| ||||||| |||| |||||||||| |||| |||||| ||||| ||||||| | | || |
|
|
| T |
7384554 |
caatgtcttctcatttcattgctaattcatcttcaattgagttgcctatatgtgcgtgcaacaaaattatgaggatgttcatctccaattcaaataaaaa |
7384455 |
T |
|
| Q |
274 |
ccctaa |
279 |
Q |
| |
|
|||||| |
|
|
| T |
7384454 |
ccctaa |
7384449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 276
Target Start/End: Complemental strand, 9419464 - 9419362
Alignment:
| Q |
174 |
caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa |
273 |
Q |
| |
|
|||||||||||||||||||| | | ||||| |||||||| | ||||| ||||| |||||||| |||||||||||| ||||| |||||| |||||| |
|
|
| T |
9419464 |
caatgtcttctcattccatttctcaatcatcatcaattgagttccctatacatggttacaacaaaataatgaagatgttcatctccaattcacatgacaa |
9419365 |
T |
|
| Q |
274 |
ccc |
276 |
Q |
| |
|
||| |
|
|
| T |
9419364 |
ccc |
9419362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 176 - 342
Target Start/End: Complemental strand, 28557221 - 28557055
Alignment:
| Q |
176 |
atgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaacc |
275 |
Q |
| |
|
|||||||||||||||||| | ||| |||| ||||||||| ||||||| ||||| |||||||||| || | |||||| ||||| |||| || ||| || | |
|
|
| T |
28557221 |
atgtcttctcattccattgctaatacatcatcaattgaattgcctatatgtgggtgcaacaaaatcataaggatgttcatctccaatttaaatgaaaatc |
28557122 |
T |
|
| Q |
276 |
ctaaaaggagatactggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttg |
342 |
Q |
| |
|
||||||||||||| |||||||| ||||| |||| |||||||| || ||||||||| || |||||| |
|
|
| T |
28557121 |
ctaaaaggagatattggaaatgtccaacctttacggtgagttcgttgttataatactatgattgttg |
28557055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 178 - 342
Target Start/End: Complemental strand, 707816 - 707652
Alignment:
| Q |
178 |
gtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccct |
277 |
Q |
| |
|
|||||||| ||||||| | ||| |||| ||||||||| ||||||| ||||| |||||||||| || | |||||| ||||| |||| || ||| |||||| |
|
|
| T |
707816 |
gtcttctcgttccattgctaatacatcatcaattgaattgcctatatgtgggtgcaacaaaatcataaggatgttcatctccaatttaaatgaaaaccct |
707717 |
T |
|
| Q |
278 |
aaaaggagatactggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttg |
342 |
Q |
| |
|
||||||||||| |||||||| ||||| |||| |||| ||| || ||||||||| ||||||||| |
|
|
| T |
707716 |
aaaaggagatattggaaatgtccaacctttacggtgtgttcgttgttataatactatgtttgttg |
707652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 174 - 317
Target Start/End: Complemental strand, 41385450 - 41385307
Alignment:
| Q |
174 |
caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa |
273 |
Q |
| |
|
||||||||||| |||||||||| | ||||| || | ||| | ||||| |||||||||||||||| |||| ||||| || || |||||| ||||||| |
|
|
| T |
41385450 |
caatgtcttctaattccattactcaatcatcatccaatgagttacctatgtgtggttgcaacaaaattatgagaatgttcatatccaattcacttgacaa |
41385351 |
T |
|
| Q |
274 |
ccctaaaaggagatactggaaatgcccaacatttatggtgagtt |
317 |
Q |
| |
|
||||||||||||||| ||||||| |||||| | ||| ||||||| |
|
|
| T |
41385350 |
ccctaaaaggagatattggaaatacccaacctatattgtgagtt |
41385307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 174 - 303
Target Start/End: Complemental strand, 31559201 - 31559072
Alignment:
| Q |
174 |
caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa |
273 |
Q |
| |
|
|||||||||||||||||||| | | ||||| |||||||| ||||||| |||||||||||||||| ||||| |||||| ||||| |||| | | |||| |
|
|
| T |
31559201 |
caatgtcttctcattccatttctcaatcatcatcaattgagttgcctatatgtggttgcaacaaaataatgaggatgttcatctccaatttatattacaa |
31559102 |
T |
|
| Q |
274 |
ccctaaaaggagatactggaaatgcccaac |
303 |
Q |
| |
|
|||||||| |||||| |||||||||||||| |
|
|
| T |
31559101 |
ccctaaaacgagatattggaaatgcccaac |
31559072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 218 - 317
Target Start/End: Complemental strand, 22059773 - 22059674
Alignment:
| Q |
218 |
cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt |
317 |
Q |
| |
|
||||| |||||||||||||||| |||| ||||| || || |||||| ||| |||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
22059773 |
cctatgtgtggttgcaacaaaatcatgagaatgttcatatccaattcacatgaaaaccctaaaaggagatactggaaatgcccaacctatatggtgagtt |
22059674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 409 - 466
Target Start/End: Complemental strand, 22059588 - 22059531
Alignment:
| Q |
409 |
tagttgcaagttgttcatatgggatgatgaaattgatggacatcctccatatgttcgt |
466 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22059588 |
tagttgtaagttgtacatatgggatgatgaaattgaaggacatcctccatatgttcgt |
22059531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 174 - 317
Target Start/End: Original strand, 42827733 - 42827876
Alignment:
| Q |
174 |
caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa |
273 |
Q |
| |
|
||||||||||| |||||||||| | ||||| || | ||| | ||||| || ||||||||||||| |||| ||||| || || |||||| ||||||| |
|
|
| T |
42827733 |
caatgtcttctaattccattactcaatcatcatccaatgagttacctatgtgcggttgcaacaaaattatgagaatgttcatatccaattcacttgacaa |
42827832 |
T |
|
| Q |
274 |
ccctaaaaggagatactggaaatgcccaacatttatggtgagtt |
317 |
Q |
| |
|
||||||||||||||| ||||||| | |||| | ||||||||||| |
|
|
| T |
42827833 |
ccctaaaaggagatattggaaatacacaacctatatggtgagtt |
42827876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 174 - 392
Target Start/End: Original strand, 1134480 - 1134697
Alignment:
| Q |
174 |
caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa |
273 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||| | | ||||||| ||||||||||| |||| |||| |||||| ||||| |||||| |||||| |
|
|
| T |
1134480 |
caatgtcttctcattccatttgtcaatcatcatcaaatcagttgcctatatgtggttgcaaaaaaattatgaggatgttcatctccaattcacatgacaa |
1134579 |
T |
|
| Q |
274 |
ccctaaaaggagatactggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttgggtattttcgcacactttaatgtaattaaaa |
373 |
Q |
| |
|
|| ||||| |||||| |||||||||||||| |||||||||| | || ||||||| ||||||| ||| ||||||| |||| |||||||||||||| | |
|
|
| T |
1134580 |
cc-taaaaagagatattggaaatgcccaacctttatggtgaatgtgttgttataatagtttgttttttgtttattttcccacattttaatgtaattaata |
1134678 |
T |
|
| Q |
374 |
gatgtgtatggttgatttt |
392 |
Q |
| |
|
| || |||| |||||||| |
|
|
| T |
1134679 |
gttgcatatgattgatttt |
1134697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 218 - 317
Target Start/End: Complemental strand, 7799823 - 7799724
Alignment:
| Q |
218 |
cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt |
317 |
Q |
| |
|
||||| |||||||||||||||| ||||| ||||| || || ||||||| || |||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
7799823 |
cctatgtgtggttgcaacaaaatcatgaaaatgttcatatccaattcaagtgcaaaccctaaaaggagatactggaaatgcccaacctatatggtgagtt |
7799724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 174 - 317
Target Start/End: Complemental strand, 19597620 - 19597477
Alignment:
| Q |
174 |
caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa |
273 |
Q |
| |
|
||||||||||| |||||||||| | ||||| || | ||| | ||||| |||||||||||||||| |||| ||||| || || |||||| ||||||| |
|
|
| T |
19597620 |
caatgtcttctaattccattactcaatcatcatccaatgagttacctatgtgtggttgcaacaaaattatgagaatgttcatatccaattcagttgacaa |
19597521 |
T |
|
| Q |
274 |
ccctaaaaggagatactggaaatgcccaacatttatggtgagtt |
317 |
Q |
| |
|
||||||||||||||| || |||| |||||| | ||||||||||| |
|
|
| T |
19597520 |
ccctaaaaggagatattgaaaatacccaacctatatggtgagtt |
19597477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 409 - 466
Target Start/End: Complemental strand, 7799640 - 7799583
Alignment:
| Q |
409 |
tagttgcaagttgttcatatgggatgatgaaattgatggacatcctccatatgttcgt |
466 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
7799640 |
tagttgtaagttgtacatatgggatgatgaaattgaaggacatgctccatatgttcgt |
7799583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 315
Target Start/End: Complemental strand, 19401734 - 19401637
Alignment:
| Q |
218 |
cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgag |
315 |
Q |
| |
|
||||| |||||||||||||||| |||| ||||| || || |||||| ||| |||||||||||||||||||||||||||| ||| | ||||||||| |
|
|
| T |
19401734 |
cctatgtgtggttgcaacaaaatcatgagaatgttcatatccaattcacgtgaaaaccctaaaaggagatactggaaatgccaaacttatatggtgag |
19401637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 19581140 - 19581083
Alignment:
| Q |
260 |
aattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt |
317 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||| |||||| | |||||| |||| |
|
|
| T |
19581140 |
aattcaattgacaactctaaaaggagatattggaaatacccaacctgtatggttagtt |
19581083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 305
Target Start/End: Complemental strand, 5386833 - 5386744
Alignment:
| Q |
216 |
tgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacat |
305 |
Q |
| |
|
|||||||||| ||||||||||||| |||| |||||| || || ||||||||||| |||||||||||||| || |||||||||||||||| |
|
|
| T |
5386833 |
tgcctatttgctgttgcaacaaaaccatgaggatgttaatatccaattcaattgaaaaccctaaaaggaggtattggaaatgcccaacat |
5386744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 304
Target Start/End: Original strand, 5386034 - 5386122
Alignment:
| Q |
216 |
tgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaaca |
304 |
Q |
| |
|
||||||||||||||| ||| |||| |||| |||||| || | ||||||||||| ||| ||||||||||||| ||||||||||||||| |
|
|
| T |
5386034 |
tgcctatttgtggtttcaattaaaccatgaggatgttcatatgcaattcaattgaaaactctaaaaggagatattggaaatgcccaaca |
5386122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 409 - 466
Target Start/End: Original strand, 5386219 - 5386276
Alignment:
| Q |
409 |
tagttgcaagttgttcatatgggatgatgaaattgatggacatcctccatatgttcgt |
466 |
Q |
| |
|
|||||| ||||||| || |||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
5386219 |
tagttgtaagttgtacaaatgggatgatgatattgaaggacatcctccatatgttcgt |
5386276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 459
Target Start/End: Original strand, 51253101 - 51253179
Alignment:
| Q |
380 |
tatggttgattttgtttttaggatcctaatagttgcaagttgttcatatgggatgatgaaattgatggacatcctccata |
459 |
Q |
| |
|
|||| ||||||||||||| ||| | ||||||||||| | ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
51253101 |
tatgattgattttgtttt-aggttggtaatagttgcaggatgttcatatgggatgatgaaattgaaatacatcctccata |
51253179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 317
Target Start/End: Original strand, 31200070 - 31200120
Alignment:
| Q |
267 |
ttgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt |
317 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| | ||||||||||| |
|
|
| T |
31200070 |
ttgacaaccctaaaaggagatattggaaatacccaacctatatggtgagtt |
31200120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 466
Target Start/End: Original strand, 5496660 - 5496716
Alignment:
| Q |
410 |
agttgcaagttgttcatatgggatgatgaaattgatggacatcctccatatgttcgt |
466 |
Q |
| |
|
||||| || |||||||||||| | ||||||||||||| ||||||| ||||||||||| |
|
|
| T |
5496660 |
agttgtaaattgttcatatggaacgatgaaattgatgaacatcctacatatgttcgt |
5496716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 303
Target Start/End: Original strand, 34594638 - 34594767
Alignment:
| Q |
174 |
caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa |
273 |
Q |
| |
|
||||||||||||||| |||| | | |||| |||||||| ||||||| | | ||||||| |||| || || |||||| ||||| |||||| |||||| |
|
|
| T |
34594638 |
caatgtcttctcatttcatttctcaaccatcatcaattgagttgcctatatatagttgcaataaaataacgaggatgttcatctccaattcacatgacaa |
34594737 |
T |
|
| Q |
274 |
ccctaaaaggagatactggaaatgcccaac |
303 |
Q |
| |
|
|||||||| ||||| || ||||| ||||| |
|
|
| T |
34594738 |
tcctaaaagaagatattgaaaatgtccaac |
34594767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 218 - 317
Target Start/End: Complemental strand, 3867 - 3768
Alignment:
| Q |
218 |
cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt |
317 |
Q |
| |
|
||||| |||||||||||||||| |||| ||||| || || |||||| ||| |||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
3867 |
cctatgtgtggttgcaacaaaatcatgagaatgttcatatccaattcacatgaaaaccctaaaaggagatactggaaatgcccaacctatatggtgagtt |
3768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 409 - 466
Target Start/End: Complemental strand, 3682 - 3625
Alignment:
| Q |
409 |
tagttgcaagttgttcatatgggatgatgaaattgatggacatcctccatatgttcgt |
466 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3682 |
tagttgtaagttgtacatatgggatgatgaaattgaaggacatcctccatatgttcgt |
3625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 317
Target Start/End: Complemental strand, 17707118 - 17706976
Alignment:
| Q |
174 |
caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa |
273 |
Q |
| |
|
|||||||||||| ||||||| | ||| |||| ||||||||| | ||||| ||||| ||||||||| || | |||||| ||||| |||| || ||| || |
|
|
| T |
17707118 |
caatgtcttctccttccattgctaatacatcatcaattgaattacctatatgtgggcgcaacaaaatcataaggatgttcatctccaatttaaatgaaaa |
17707019 |
T |
|
| Q |
274 |
ccctaaaaggagatactggaaatgcccaacatttatggtgagtt |
317 |
Q |
| |
|
|||| |||| ||||| |||||||| ||||| |||| |||||||| |
|
|
| T |
17707018 |
ccct-aaagaagatattggaaatgtccaacctttacggtgagtt |
17706976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 342
Target Start/End: Original strand, 36900336 - 36900431
Alignment:
| Q |
247 |
gatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttg |
342 |
Q |
| |
|
|||||| ||||| |||| || ||| ||||||||||||||||| || ||||| ||||| |||| |||||||| || ||||||||| ||||||||| |
|
|
| T |
36900336 |
gatgttcatctccaatttaaatgaaaaccctaaaaggagatattgaaaatgtccaacctttacggtgagttcgttgttataatactatgtttgttg |
36900431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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