View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11557A_low_160 (Length: 287)

Name: NF11557A_low_160
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11557A_low_160
NF11557A_low_160
[»] chr1 (6 HSPs)
chr1 (14-222)||(23915210-23915414)
chr1 (224-284)||(23915125-23915185)
chr1 (224-282)||(23922776-23922834)
chr1 (159-222)||(23922872-23922935)
chr1 (72-140)||(23922954-23923022)
chr1 (232-284)||(25803226-25803278)


Alignment Details
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 23915414 - 23915210
Alignment:
Q  14 atgcatgagtcgcacctcgtcatagtacgtcattactggtatgaactgagttactaacaaaaaaccaagaatattaatggtgaatgaatttctttctgac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23915414 atgcatgagtcgcacctcgtcatagtacgtcattactggtatgaactgagttactaacaaaaaaccaagaatattaatggtgaatgaatttctttctgac 23915315  T
Q  114 tacattcattgacttattttgactgagtgaagtccttnnnnnnnnggtactgcatcataatgcctataaattaagaaccctaagtaacgtctcttcttca 213  Q
    |||||||||||||||||||||||||||||||||||||        |||||||||| ||||||||||||||||||||||||    |||||||| |||| ||    
T  23915314 tacattcattgacttattttgactgagtgaagtccttaaaaaaaaggtactgcattataatgcctataaattaagaaccc----taacgtctattctcca 23915219  T
Q  214 ttctcctca 222  Q
    |||||||||    
T  23915218 ttctcctca 23915210  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 23915185 - 23915125
Alignment:
Q  224 aagagaaaatggcatcttcaacttatttatccattttgctcaccatttcaatgatctttat 284  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23915185 aagagaaaatggcatcttcaacctatttatccattttgctcaccatttcaatgatctttat 23915125  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 224 - 282
Target Start/End: Complemental strand, 23922834 - 23922776
Alignment:
Q  224 aagagaaaatggcatcttcaacttatttatccattttgctcaccatttcaatgatcttt 282  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  23922834 aagagaaaatggcatcttcagcctatttatccattttgctcaccatttcaatgatcttt 23922776  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 23922935 - 23922872
Alignment:
Q  159 ggtactgcatcataatgcctataaattaagaaccctaagtaacgtctcttcttcattctcctca 222  Q
    |||||| ||| |||||||||||| |||||||||||||||||||||||||||| || ||||||||    
T  23922935 ggtactacattataatgcctatatattaagaaccctaagtaacgtctcttctccactctcctca 23922872  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 140
Target Start/End: Complemental strand, 23923022 - 23922954
Alignment:
Q  72 aaaaaaccaagaatattaatggtgaatgaatttctttctgactacattcattgacttattttgactgag 140  Q
    ||||||||||||||||||||||||| |  |||| |||||||||||||||||| ||| ||||||| ||||    
T  23923022 aaaaaaccaagaatattaatggtgactttatttgtttctgactacattcattaactcattttgattgag 23922954  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 25803278 - 25803226
Alignment:
Q  232 atggcatcttcaacttatttatccattttgctcaccatttcaatgatctttat 284  Q
    |||||| ||||||| ||||||||  |||||||||||||||||||||| |||||    
T  25803278 atggcaccttcaacatatttatcatttttgctcaccatttcaatgatgtttat 25803226  T

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