View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_165 (Length: 285)
Name: NF11557A_low_165
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_165 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0127 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 285
Target Start/End: Original strand, 26609829 - 26610100
Alignment:
| Q |
14 |
tggctgcctaatccttccttgaacatgacatcttatcatgccacaattaacaactcaagtttcatatagaaaataaataagtgaattaactataatcaac |
113 |
Q |
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| T |
26609829 |
tggctgcctaatcctaccttgaacatgacatcttatcatgccacaattaacaactcaagtttcatatagaaaataaataagtgaattatctataatcaat |
26609928 |
T |
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| Q |
114 |
gagtgtgtgttgaaggtaggtcttggatatgtggtgagtgcattcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtag |
213 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26609929 |
gagtgtgtgttgaaggtaggtcttggatatgtggggagtgcattcgtgtctttgttggtgtttattttgtgtgttctgtttacatacgacatctttgtag |
26610028 |
T |
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| Q |
214 |
tctctgatttaccgatctctgttcatgttgagcatagatttaggttttaataaattttgccgttgagaaaaa |
285 |
Q |
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| T |
26610029 |
tctctgatttaccgatctctgttcatgttgagcagagatttaggttataataaattttgccgttgaaaaaaa |
26610100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 237
Target Start/End: Complemental strand, 8987700 - 8987582
Alignment:
| Q |
120 |
gtgttgaaggtaggtcttggatatgtggtgagtgca-ttcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctct |
218 |
Q |
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| T |
8987700 |
gtgttgaaggtaggtcttaggtgggtgctgtgtgtatttcgtgtctttattggtgtttattttgggtgttccgcatatatatggtgccttcgtagtctct |
8987601 |
T |
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| Q |
219 |
gatttaccgatctctgttc |
237 |
Q |
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| T |
8987600 |
gatttaccaatctctgttc |
8987582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 275
Target Start/End: Complemental strand, 21301 - 21181
Alignment:
| Q |
155 |
attcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctgatttaccgatctctgttcatgttgagcatagattt |
254 |
Q |
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|||||||||||||||| |||| |||||| |||||| | ||| |||||||| |||||||||||||||||||| | | | ||||| | ||| ||| |||| |
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| T |
21301 |
attcgtgtctttattgatgttcattttgggtgttccgcctatatacgacacctttgtagtctctgatttacaggtttttgttcgtcttgtgcagagatcg |
21202 |
T |
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| Q |
255 |
aggttttaataaattttgccg |
275 |
Q |
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| T |
21201 |
agttttaaataaattttgccg |
21181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 21029981 - 21030060
Alignment:
| Q |
166 |
tattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctgatttaccgatctctgttcatgttgag |
245 |
Q |
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| T |
21029981 |
tattggtgtttattttgggtgttccgcctacatacggcacctttgtagtctttgatttaccggtctcgattcatgttgag |
21030060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 216
Target Start/End: Original strand, 5746925 - 5747022
Alignment:
| Q |
120 |
gtgttgaaggtaggtcttggatatgtggtgagtgca-ttcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtct |
216 |
Q |
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| T |
5746925 |
gtgttgaaggtaggtcttaggtaggtgatgtgtgtaattcgtgtctttattgatgttcattttaggtgttccgcctatatacgacgcctttgtagtct |
5747022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 120 - 233
Target Start/End: Complemental strand, 33283733 - 33283620
Alignment:
| Q |
120 |
gtgttgaaggtaggtcttggatatgtggtgagtgcattcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctg |
219 |
Q |
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|||||||| ||||||||||||| ||| || | |||||||| ||||| ||||||||||||| ||||| ||||| |||| || ||||| || |||||| |
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| T |
33283733 |
gtgttgaaattaggtcttggataggtgatgtaggtattcgtgtttttatcggtgtttattttggatgttccgtctatatacaacgtctttataatctctg |
33283634 |
T |
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| Q |
220 |
atttaccgatctct |
233 |
Q |
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| T |
33283633 |
atttaccgatctct |
33283620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 247
Target Start/End: Complemental strand, 43344593 - 43344505
Alignment:
| Q |
159 |
gtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctgatttaccgatctctgttcatgttgagca |
247 |
Q |
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| T |
43344593 |
gtgtctttattggtgtttattttgagttttccgcctatatacggcacatttgtagtctctggtttaccggtctctattcgtcttgagca |
43344505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 15817072 - 15817012
Alignment:
| Q |
207 |
tttgtagtctctgatttaccgatctctgttcatgttgagcatagatttaggttttaataaa |
267 |
Q |
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| T |
15817072 |
tttgtagtctctaattgactggtctctgttcatcttgagcagagatctagtttttaataaa |
15817012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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