View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_168 (Length: 282)
Name: NF11557A_low_168
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_168 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 6e-74; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 13 - 153
Target Start/End: Complemental strand, 11655048 - 11654908
Alignment:
| Q |
13 |
aatatatataaagacttactacaaattggtttgcaagtgttgcagtcaacctcacatccacctcggcatgcattaggacaggcatgttccatattgtaac |
112 |
Q |
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| T |
11655048 |
aatatatataaagacttactacaaattggtttgcaagtgttgcagtcaacctcacatccacctcggcatgcattaggacaggcatgttccatattgtaac |
11654949 |
T |
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| Q |
113 |
attttgggtagttcttgttcccacatctagcggttttgtgc |
153 |
Q |
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| T |
11654948 |
attttgggtagttcttgttcccacatctagcggttttgtgc |
11654908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 13 - 153
Target Start/End: Complemental strand, 11668816 - 11668676
Alignment:
| Q |
13 |
aatatatataaagacttactacaaattggtttgcaagtgttgcagtcaacctcacatccacctcggcatgcattaggacaggcatgttccatattgtaac |
112 |
Q |
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| T |
11668816 |
aatatatataaagacttactacaaattggtttgcaagtgttgcagtcaacctcacatccacctcggcatgcattaggacaggcatgttccatattgtaac |
11668717 |
T |
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| Q |
113 |
attttgggtagttcttgttcccacatctagcggttttgtgc |
153 |
Q |
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| T |
11668716 |
attttgggtagttcttgttcccacatctagcggttttgtgc |
11668676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 282
Target Start/End: Complemental strand, 11654818 - 11654785
Alignment:
| Q |
249 |
tgggttatgtgatgtagaagggctgttagttgat |
282 |
Q |
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| T |
11654818 |
tgggttatgtgatgtagaagggctgttagttgat |
11654785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 282
Target Start/End: Complemental strand, 11668586 - 11668553
Alignment:
| Q |
249 |
tgggttatgtgatgtagaagggctgttagttgat |
282 |
Q |
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| T |
11668586 |
tgggttatgtgatgtagaagggctgttagttgat |
11668553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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