View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_169 (Length: 282)
Name: NF11557A_low_169
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_169 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 277
Target Start/End: Complemental strand, 2105012 - 2104729
Alignment:
| Q |
9 |
aagaagaaaatttacctctctttttccactgctcgtgatttctc---------------aactccaattccagctctaatgtgtttgttagagtccacag |
93 |
Q |
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| T |
2105012 |
aagaagaaaatttacctctctttttccactgctcgtgatttctctctctatgatttttcaactccaattccaggtctaatgtgtttgttagagtccacag |
2104913 |
T |
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| Q |
94 |
tactatactatatagtaaaattgatcggtttgttataacaaattctgagaccggatttcaaattttttgttaaccagaataaattctttacgacaacaac |
193 |
Q |
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| T |
2104912 |
tactatactatatagtaaaattgatcggtttgttataacaaattctgaaaccggatttcaaattttttattaaccagaataaattctttactacaacaac |
2104813 |
T |
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| Q |
194 |
tatggacagtaataaaaactaaccaaggtaaatgtaataaagagcatggcagtaataatggctatcctatgtcaccaatgtact |
277 |
Q |
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| T |
2104812 |
tatggacagtaataaaaactaaccaaggtaaatgtaataaagagcatggcagtaataatggctatcctatgtcaccaatgtact |
2104729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 44 - 184
Target Start/End: Complemental strand, 2096147 - 2096001
Alignment:
| Q |
44 |
tgatttctcaactccaattccagctctaatgtgtttgttagagtccacagtacta----tactata--tagtaaaattgatcggtttgttataacaaatt |
137 |
Q |
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| T |
2096147 |
tgatttttcaactccaagtctagctctaatgtgtttgttagagtccgcagtagtagtagtagtataaatagtaaaactgatcggtttgttataacaaatt |
2096048 |
T |
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| Q |
138 |
ctgagaccggatttcaaattttttgttaaccagaataaattctttac |
184 |
Q |
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| T |
2096047 |
ctgaaaccggatttcaaattttttattaaccagagtaaattctttac |
2096001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 192 - 277
Target Start/End: Complemental strand, 2085947 - 2085862
Alignment:
| Q |
192 |
actatggacagtaataaaaactaaccaaggtaaatgtaataaagagcatggcagtaataatggctatcctatgtcaccaatgtact |
277 |
Q |
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| T |
2085947 |
actatggacagtaataaaaaccaaccatggtaaatgtaataatgagcatggcagaaataatagcaatcctatgtcaccaatgtact |
2085862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 2052826 - 2052780
Alignment:
| Q |
110 |
aaaattgatcggtttgttataacaaattctgagaccggatttcaaat |
156 |
Q |
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| T |
2052826 |
aaaactgatcggtttgttataacaaattctgaaaccggatttcaaat |
2052780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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