View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11557A_low_17 (Length: 457)
Name: NF11557A_low_17
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 13 - 435
Target Start/End: Original strand, 32665424 - 32665853
Alignment:
| Q |
13 |
agatgaactacttcactggcttgataaatatgaatacaagacatnnnnnnnnnn------gtgaatcatcatcatatccaataccataaatcatacaagt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32665424 |
agatgaactacttcactggcttgataaatatgaatacacgacatataaaaaaaaaaaaaagtgaatcatcatcatatccaataccataaatcatacaagt |
32665523 |
T |
|
| Q |
107 |
acaatggcgtatgtatttctcaaaattctattacaataccaataactttagcttttgctcccgcggtctgcgg-atacataaataaagttctacataata |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
32665524 |
acaatggcgtatgtatttctcaaaattctattacaataccaataactttagcaaaggctcccacggtccgcgggatacataaataaagttctacataata |
32665623 |
T |
|
| Q |
206 |
caactcctacatttactacttgagcttcatttgggattaaataattggaatcgtgttgtaactccaataaatactacccaagctttttcaccatgctgtc |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32665624 |
caactcctacatttactacttgagcttcatttgggattaaataattggaatcgtgttgtaactccaataaatactacccaagctttttcaccacgctgtc |
32665723 |
T |
|
| Q |
306 |
gtttctttgatataaaatggtgaaaagaagaaatttgttcataaccggaaagttgtctaactgcctaagaacaacatttcattttatattttcctatttt |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32665724 |
gtttctttgatataaaatggtgaaaagaagatatttgttcataaccggaaagttgtctaactgcctaagaacagcatttcattttatattttcctatttt |
32665823 |
T |
|
| Q |
406 |
ggtggacaaaaaattgatgcatatcttgta |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
32665824 |
ggtggacaaaaaattgatgcatatcttgta |
32665853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University