View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_174 (Length: 279)
Name: NF11557A_low_174
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_174 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 5 - 279
Target Start/End: Original strand, 36506362 - 36506635
Alignment:
| Q |
5 |
cagaaacatagaatagaggccgaacaactaacaacaacaaaccctctacgctaactagcaaaatctgagaagctaagaacaaaaaacaccaaaaaccaaa |
104 |
Q |
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|||||| | |||| ||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36506362 |
cagaaaaacagaacagaggccaaacaactaacaacaacaacccctctacgccaactagcaaaatctgagaagctaagaacaaaaaacagcaaaaaccaaa |
36506461 |
T |
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| Q |
105 |
cagcagcacacttatggacacacacttcaatttgataacaagaaatggaaacatgcaagagaaaaatggaattaattgacattttacctgcttgtactca |
204 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36506462 |
cagcagcacacttatggacacacacttcaatt-gataacaagaaatggaaacatgcaagagaaaaatggaattaattgatattttacctgcttgtactca |
36506560 |
T |
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| Q |
205 |
aataattccttgtctgagtagtagaattctctttttgtggagtaggaattgtctttcaacaaatctatgatcaag |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36506561 |
aataattccttgtctgagtagtagaattctctttttgtggagtaggaattgtctttcaacaaatatatgatcaag |
36506635 |
T |
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