View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11557A_low_175 (Length: 279)
Name: NF11557A_low_175
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_175 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 6 - 274
Target Start/End: Complemental strand, 530132 - 529864
Alignment:
| Q |
6 |
tcgaagaatatcaaacaccctccttggaggaactggaagccaaaaagaagtagcagcacttagcactacactgacgggtttgtcaatgctcgattcatcg |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
530132 |
tcgaagaaaatcaaacaccctccttggaggaactggaagccaaaaagaagtagcagcacttagcactacactgacgggtttgtcaatgctcgattcatcg |
530033 |
T |
|
| Q |
106 |
gtatatctttttgtcatgaccattacaacctccggtccgtttccaggtacctttgtccaagcatgtgttgtagaagaaccaatacttgtactaaagctag |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
530032 |
atatatctttttgtcatgaccattacaacctccggtccgtttccaggtacctttgtccaagcatgtgttgtagaagaaccaatacttgtactaaagctag |
529933 |
T |
|
| Q |
206 |
ctaccaacctttccgcaagattcaatatacttttctttccctcaggagtcaatctcactgtacatatat |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
529932 |
ctaccaacctttccgcaagattcaatatacttttctttccctcaggagtcaatctcactgtacatatat |
529864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 16828413 - 16828377
Alignment:
| Q |
29 |
ttggaggaactggaagccaaaaagaagtagcagcact |
65 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
16828413 |
ttggtggaacaggaagccaaaaagaagtagcagcact |
16828377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University