View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_178 (Length: 278)
Name: NF11557A_low_178
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_178 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 7 - 263
Target Start/End: Complemental strand, 43024196 - 43023940
Alignment:
| Q |
7 |
taacaaagataagagtgttgaagtttatgatatctatgtgaaactctacttcgaaattagattcagactcgggaatgtgatatttggtcgtatcaatccg |
106 |
Q |
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| T |
43024196 |
taacaaagataagagtgttgaagtttatgatatctatgtgaaactctacttcgaaattagattcagactcgggaatgtgatatttggtcgtatcaatccg |
43024097 |
T |
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| Q |
107 |
aaagtgaagtgtgacctcaaagttcctttgaattctaagaatacctccactcagcttgtgcccaccaagtgcgatgttgatctctactaacttgcgcctc |
206 |
Q |
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| T |
43024096 |
aaagtgaaatgtgacctcaaagttcctttgaattctaagaataccttcactcagcttgtgcccaccaagtgcgatgttgatctctactaacttgcgcctc |
43023997 |
T |
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| Q |
207 |
tgatggatcgttttcttggcacagcagtattgattgggatttgtctcttcacactat |
263 |
Q |
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| T |
43023996 |
tgatggatcgttttcttggcacagcagtattgattgggatttgtctcttcacactat |
43023940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 43049347 - 43049210
Alignment:
| Q |
7 |
taacaaagataagagtgttgaagtttatgatatctatgtgaaactctacttcgaaattagattcagactcgggaatgtgatatttggtcgtatcaatccg |
106 |
Q |
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| T |
43049347 |
taacaaagacaagagtgatgaagtttatgatatctatgtgaggctttactttaggattaggttcagacttggggatttgatatcgggtgattacaagcct |
43049248 |
T |
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| Q |
107 |
aaagtgaagtgtgacctcaaagttcctttgaattctaa |
144 |
Q |
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| T |
43049247 |
aaggtgaaatgtgacttcaaagttcctttgagttctaa |
43049210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 43054880 - 43054831
Alignment:
| Q |
8 |
aacaaagataagagtgttgaagtttatgatatctatgtgaaactctactt |
57 |
Q |
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| T |
43054880 |
aacaaagataagaatgttggagtttatgatatctatgtgaagctctactt |
43054831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 43062129 - 43062081
Alignment:
| Q |
10 |
caaagataagagtgttgaagtttatgatatctatgtgaaactctacttc |
58 |
Q |
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| T |
43062129 |
caaagacaagagtgttggagtttatggtatctatgtgaagctctacttc |
43062081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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