View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_179 (Length: 277)
Name: NF11557A_low_179
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_179 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 3 - 271
Target Start/End: Original strand, 4165218 - 4165485
Alignment:
| Q |
3 |
tacaaatggtgagtattcttagtcatagtatttagtccctgtaaatgcaaaataaggaccaattttagacaaaatttgtgtagggattaaacttaaaagt |
102 |
Q |
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| T |
4165218 |
tacaaatggtgagtattcttagtcatagtatttagtccctgtaaatgcaaaataaggaccaattttagacaaaatttgtgtggggattaaacttaaaagt |
4165317 |
T |
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| Q |
103 |
tgtaactttataaatgatgagtattctgagcataacagattacttggaataacaaattgacatattcaacccactcatgagggaaggaagggccacaacc |
202 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4165318 |
tgtaactttataaatggtgagtattctgaacataacagattacttggaataacaaattgacatattcaacccactcatgagggaaggaagggccacaa-c |
4165416 |
T |
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| Q |
203 |
cctatgtgtccctccttccatccatctagcctatgtgcattgtactaaaaatcgacatatattcttgga |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4165417 |
cctatgtgtccctccttccatccatctagcctatgtgcattgtactaaaaatcgacatatatttttgga |
4165485 |
T |
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