View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_181 (Length: 277)
Name: NF11557A_low_181
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_181 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 14 - 269
Target Start/End: Complemental strand, 5690136 - 5689881
Alignment:
| Q |
14 |
gaaaggtgatagatatgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttat |
113 |
Q |
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| T |
5690136 |
gaaaggtgatagatatgaagcaatctacagtttccattttggtgattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttat |
5690037 |
T |
|
| Q |
114 |
ctagctgtgactggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5690036 |
ctagctgtgactggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatt |
5689937 |
T |
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| Q |
214 |
tgagaggtattaaggatttgccacaagagcttcttggtaagcatgttgagccttct |
269 |
Q |
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| T |
5689936 |
tgagaggtattaaggatttgccacaagagcttcttggtaaacatgttgagccttct |
5689881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 25914813 - 25914568
Alignment:
| Q |
18 |
ggtgatagatatgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttatctag |
117 |
Q |
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| T |
25914813 |
ggtgacagatatgaagcaatctacagttttcacgttggagactatggtcaaatagctgtgcaaggaccttacctaacctat---gaggacacatatctaa |
25914717 |
T |
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| Q |
118 |
ctgtgactggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgag |
217 |
Q |
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| T |
25914716 |
ctgtgactggtggtactggaatttttgaaggtgttacaggccaagtgaagctcaatcaaattgtttttccatttaagattttctacacattttatttgaa |
25914617 |
T |
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| Q |
218 |
aggtattaaggatttgccacaagagcttcttggtaagcatgttgagcct |
266 |
Q |
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| T |
25914616 |
gggtattaaggatttgccacaagagcttcttggtaaaccagttgagcct |
25914568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 26 - 266
Target Start/End: Original strand, 6792563 - 6792803
Alignment:
| Q |
26 |
atatgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttatctagctgtgact |
125 |
Q |
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| T |
6792563 |
atatgaagcaatatatagtttttattttggagagtatggtcatatttctgtgcaaggttcttatttaacttatgaggaggatacttatttggctgtgact |
6792662 |
T |
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| Q |
126 |
ggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggtatta |
225 |
Q |
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| T |
6792663 |
ggtggaactggaatatttgaaggtgtttatggtcaagttaagcttcatcaaattgtgtttccatttaagatattttacacattttatcttaagggtatta |
6792762 |
T |
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| Q |
226 |
aggatttgccacaagagcttcttggtaagcatgttgagcct |
266 |
Q |
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| T |
6792763 |
aggatttgccacatgagtttcttgttaatcctattgagcct |
6792803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 238
Target Start/End: Original strand, 6800131 - 6800246
Alignment:
| Q |
123 |
actggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggta |
222 |
Q |
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|||||||| |||||||||||||||||||| | |||||||| ||| | ||||||||||| |||||||| ||| | || || ||||||||| | | |||| |
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| T |
6800131 |
actggtggaactggaatatttgaaggtgtttatggtcaagttaagcttcatcaaattgtgtttccatttaagctattttacacattttatcttatgggta |
6800230 |
T |
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| Q |
223 |
ttaaggatttgccaca |
238 |
Q |
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| T |
6800231 |
ttaaggatttgccaca |
6800246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 22227359 - 22227490
Alignment:
| Q |
18 |
ggtgatagatatgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttatctag |
117 |
Q |
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|||||||||||||||||||| ||||| ||| | |||||||| |||||||| || |||| |||||||| ||| | || || | | ||||| ||||| | |
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| T |
22227359 |
ggtgatagatatgaagcaatttacagcttctactttggagactatggtcatatatcagtacaaggaccttatctcacatacc---aagacacatatcttg |
22227455 |
T |
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| Q |
118 |
ctgtgactggtggttctggaatatttgaaggtgtt |
152 |
Q |
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| T |
22227456 |
ctataacaggtggttctggaatctttgaaggtgtt |
22227490 |
T |
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