View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_184 (Length: 275)
Name: NF11557A_low_184
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_184 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 193 - 275
Target Start/End: Original strand, 4165107 - 4165189
Alignment:
| Q |
193 |
ttacattaaaacaatatgaattttttgtccttatgaaattatgaatatttatatttagtccctatataaattttctccaatct |
275 |
Q |
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| T |
4165107 |
ttacattaaaacaatataaattttttgtccttatgaaattatgaatatttatatttagtccctatataaattttctccaatct |
4165189 |
T |
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Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 44 - 146
Target Start/End: Original strand, 4164965 - 4165066
Alignment:
| Q |
44 |
attacatctatgattctatatatggtgtacatctatatccttcaaaaacaaaatctatgattctatacnnnnnnnntacattaaatctgtgatgattcaa |
143 |
Q |
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| T |
4164965 |
attacatctatgattctatatatggtgtacatctatatccttcaaaaacaaaatctatgattctatac-aaaaaaatacattaaatctgtgatgattcaa |
4165063 |
T |
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| Q |
144 |
tgc |
146 |
Q |
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| T |
4165064 |
tgc |
4165066 |
T |
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