View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11557A_low_19 (Length: 450)

Name: NF11557A_low_19
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11557A_low_19
NF11557A_low_19
[»] chr4 (4 HSPs)
chr4 (3-446)||(25109404-25109846)
chr4 (160-215)||(24306401-24306456)
chr4 (314-428)||(3938201-3938315)
chr4 (36-88)||(19149876-19149928)
[»] chr5 (4 HSPs)
chr5 (314-428)||(39045195-39045309)
chr5 (52-278)||(5122762-5122988)
chr5 (314-422)||(7280100-7280208)
chr5 (374-425)||(41701214-41701265)
[»] chr6 (7 HSPs)
chr6 (36-253)||(28493627-28493844)
chr6 (36-253)||(29806036-29806253)
chr6 (36-308)||(16498234-16498506)
chr6 (162-308)||(31932142-31932288)
chr6 (321-428)||(35164294-35164401)
chr6 (103-266)||(6180221-6180384)
chr6 (46-128)||(7469845-7469927)
[»] chr1 (3 HSPs)
chr1 (168-308)||(45516559-45516699)
chr1 (109-308)||(44093782-44093981)
chr1 (47-133)||(42767690-42767776)
[»] chr2 (3 HSPs)
chr2 (109-308)||(35296964-35297163)
chr2 (109-308)||(14688491-14688690)
chr2 (160-311)||(44024042-44024193)
[»] scaffold0015 (1 HSPs)
scaffold0015 (109-308)||(13900-14099)
[»] chr8 (6 HSPs)
chr8 (110-306)||(29259107-29259303)
chr8 (187-308)||(13821265-13821386)
chr8 (104-278)||(13075227-13075401)
chr8 (103-269)||(26706713-26706879)
chr8 (109-266)||(40736660-40736817)
chr8 (374-445)||(28574288-28574360)
[»] chr3 (5 HSPs)
chr3 (147-308)||(49147825-49147986)
chr3 (36-211)||(43367634-43367807)
chr3 (314-428)||(3423246-3423360)
chr3 (314-428)||(22163917-22164031)
chr3 (103-176)||(47158821-47158894)
[»] chr7 (2 HSPs)
chr7 (238-308)||(16768109-16768179)
chr7 (314-428)||(33631415-33631529)


Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 3 - 446
Target Start/End: Original strand, 25109404 - 25109846
Alignment:
Q  3 aactcctaattcagccatctggagcatatgcaccaggtcctctggaggagaagagtgaatagacaactcgacatcattcgagactctaaatttgattcta 102  Q
    ||||||||||||| || ||| ||| | | |||  |||||||||| || |||||||||||||||||||||||||||||||||| |||||| |||| | |||    
T  25109404 aactcctaattcatccgtcttgagtagaggcagtaggtcctctgaagaagaagagtgaatagacaactcgacatcattcgaggctctaagtttggtccta 25109503  T
Q  103 aaatccgcacactgattgccttctctgagcgaacggtgaaggaagaaatttcgagaactcatgtggtctttgatattttggataagaacaatatagacat 202  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  25109504 aaatccgcacactgattgccttctctgagcgaatggtgaaggaagaaatttcgagaactcatgtg-tctttgatattttggataagaacagtatagacat 25109602  T
Q  203 gaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaactttaaacc 302  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||    
T  25109603 gaaactgatt-aaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagcaatttccacacaattgaagctaatcgccaactttaaacc 25109701  T
Q  303 ttgatagtgctatgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaat 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||  ||||||||| |||||||||||||||    
T  25109702 ttgatagtgctatgaaagtcattctcatttattttttacttctgaatttgctgatgctgtgtggacaggttctgcgagatggatgaatatgagcatcaat 25109801  T
Q  403 actagcaactgacagtctattttgcatgatgtcca-tctcattga 446  Q
    ||||||||||||||||||||||||||| |||| || |||||||||    
T  25109802 actagcaactgacagtctattttgcattatgttcagtctcattga 25109846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 24306401 - 24306456
Alignment:
Q  160 ctcatgtggtctttgatattttggataagaacaatatagacatgaaactgatttaa 215  Q
    |||||| |||||||||||||||| ||||| |||| ||| |||||||| ||||||||    
T  24306401 ctcatgaggtctttgatattttgtataagcacaacataaacatgaaagtgatttaa 24306456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 428
Target Start/End: Complemental strand, 3938315 - 3938201
Alignment:
Q  314 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 413  Q
    |||||| |||||||||  | |||||| ||| ||| | || ||||||||| |||| || |  |||||||||||| |||||||   ||||||||||||| ||    
T  3938315 atgaaactcattctcacctctttttttcttgtgattatgctgatgctgtttggaaaggtgttatgagatggatgaatatgacggtcaatactagcaattg 3938216  T
Q  414 acagtctattttgca 428  Q
     || |||||||||||    
T  3938215 gcattctattttgca 3938201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 19149876 - 19149928
Alignment:
Q  36 caggtcctctggaggagaagagtgaatagacaactcgacatcattcgagactc 88  Q
    ||||||||| ||||||||||||||||| |||| ||  ||||||||||| ||||    
T  19149876 caggtcctccggaggagaagagtgaatggacagcttaacatcattcgaaactc 19149928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 314 - 428
Target Start/End: Complemental strand, 39045309 - 39045195
Alignment:
Q  314 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 413  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||    
T  39045309 atgaaagtcattctcatttattttttacttgtgaatttgttgatgctgtgtggacaggttctatgagatggatgaatatgagcatcaatactagcagctg 39045210  T
Q  414 acagtctattttgca 428  Q
    | |||||||||||||    
T  39045209 agagtctattttgca 39045195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 52 - 278
Target Start/End: Complemental strand, 5122988 - 5122762
Alignment:
Q  52 gaagagtgaatagacaactcgacatcattcgagactctaaatttgattctaaaatccgcacactgattgccttctctgagcgaacggtgaaggaagaaat 151  Q
    ||||||||||||  ||| ||||||||||||||||||||||  ||     |  |||| ||||||||||||||||||||||| ||| | |||||   |||||    
T  5122988 gaagagtgaataaccaaatcgacatcattcgagactctaagcttagccatgtaatctgcacactgattgccttctctgagtgaatgctgaagagtgaaat 5122889  T
Q  152 ttcgagaactcatgtggtctttgatattttggataagaacaatatagacatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatc 251  Q
    |||  ||||||||| |||||||||| || | ||| ||||||| ||| |||||| | ||||| ||||| || ||||| || ||||| |  || || |||||    
T  5122888 ttcttgaactcatgaggtctttgatgttctagatgagaacaacataaacatgataatgattgaaatcatccttgatgagattgacggtgaggagagaatc 5122789  T
Q  252 tgtgtagcaagccaattcctcacaatt 278  Q
    ||  |||||||| |||| |||| ||||    
T  5122788 tgaatagcaagctaatttctcaaaatt 5122762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 422
Target Start/End: Original strand, 7280100 - 7280208
Alignment:
Q  314 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 413  Q
    |||||| |||||||||  | |||||| ||| ||||| || ||||| |||||||| || | ||||||||||||||||||||||  ||||||||||||||||    
T  7280100 atgaaactcattctcacctgtttttttcttgtgaatatgctgatgttgtgtggaaaggtgctatgagatggataaatatgagtgtcaatactagcaactg 7280199  T
Q  414 acagtctat 422  Q
     || |||||    
T  7280200 gcaatctat 7280208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 374 - 425
Target Start/End: Complemental strand, 41701265 - 41701214
Alignment:
Q  374 ctatgagatggataaatatgagcatcaatactagcaactgacagtctatttt 425  Q
    ||||||||||||| ||  ||||||||||||||||||||||||| ||||||||    
T  41701265 ctatgagatggatgaacttgagcatcaatactagcaactgacaatctatttt 41701214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 6e-41; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 36 - 253
Target Start/End: Complemental strand, 28493844 - 28493627
Alignment:
Q  36 caggtcctctggaggagaagagtgaatagacaactcgacatcattcgagactctaaatttgattctaaaatccgcacactgattgccttctctgagcgaa 135  Q
    ||||| ||||||||| |||||||| |||||||||||| ||||||||||  ||| ||  |||     ||| || ||||||||||||||||||||||| |||    
T  28493844 caggttctctggaggtgaagagtggatagacaactcgtcatcattcgaagctcgaagcttggccagaaagtcggcacactgattgccttctctgagtgaa 28493745  T
Q  136 cggtgaaggaagaaatttcgagaactcatgtggtctttgatattttggataagaacaatatagacatgaaactgatttaaatcttctttgataaggttga 235  Q
     |  ||||| ||||||||| || |||||||  ||||||||| |||||||||||||||  |||||||||||| ||||||||||| |||||||| |||||||    
T  28493744 tgccgaagggagaaatttctagtactcatgatgtctttgatgttttggataagaacagaatagacatgaaaatgatttaaatcatctttgatgaggttga 28493645  T
Q  236 cagcaagaagggaatctg 253  Q
    || ||||||| |||||||    
T  28493644 caacaagaagagaatctg 28493627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 36 - 253
Target Start/End: Complemental strand, 29806253 - 29806036
Alignment:
Q  36 caggtcctctggaggagaagagtgaatagacaactcgacatcattcgagactctaaatttgattctaaaatccgcacactgattgccttctctgagcgaa 135  Q
    ||||| ||||||||| |||||||| |||||||||||| ||||||||||  ||| ||  |||     ||| || ||||||||||||||||||||||| |||    
T  29806253 caggttctctggaggtgaagagtggatagacaactcgtcatcattcgaagctcgaagcttggccagaaagtcggcacactgattgccttctctgagtgaa 29806154  T
Q  136 cggtgaaggaagaaatttcgagaactcatgtggtctttgatattttggataagaacaatatagacatgaaactgatttaaatcttctttgataaggttga 235  Q
     |  ||||| ||||||||| || |||||||  ||||||||| |||||||||||||||  |||||||||||| ||||||||||| |||||||| |||||||    
T  29806153 tgccgaagggagaaatttctagtactcatgatgtctttgatgttttggataagaacagaatagacatgaaaatgatttaaatcatctttgatgaggttga 29806054  T
Q  236 cagcaagaagggaatctg 253  Q
    || ||||||| |||||||    
T  29806053 caacaagaagagaatctg 29806036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 36 - 308
Target Start/End: Original strand, 16498234 - 16498506
Alignment:
Q  36 caggtcctctggaggagaagagtgaatagacaactcgacatcattcgagactctaaatttgattctaaaatccgcacactgattgccttctctgagcgaa 135  Q
    |||||||||||||||||||||||| | || ||| || |||||  ||||  ||| || |||     |||| || ||| ||||||| || |||||||| ||     
T  16498234 caggtcctctggaggagaagagtggagagtcaattcaacatcgctcgatgctccaagtttagccataaagtctgcatactgatttccctctctgagtgag 16498333  T
Q  136 cggtgaaggaagaaatttcgagaactcatgtggtctttgatattttggataagaacaatatagacatgaaactgatttaaatcttctttgataaggttga 235  Q
     | ||||||  |||||| ||||||  ||||  ||||||||||||||| || |||| |  ||  |||||||| ||||||||||| |||||||| ||||| |    
T  16498334 tgatgaaggttgaaattacgagaaaccatgatgtctttgatattttgaatgagaatagcatgaacatgaaaatgatttaaatcatctttgatgaggttca 16498433  T
Q  236 cagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaactttaaaccttgata 308  Q
      ||||||||||| ||||  ||||| ||||||||||||||||| ||| ||| ||||||| |||| ||||||||    
T  16498434 ttgcaagaagggagtctgaatagcacgccaattcctcacaatttaagttaaccgccaaccttaacccttgata 16498506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 162 - 308
Target Start/End: Original strand, 31932142 - 31932288
Alignment:
Q  162 catgtggtctttgatattttggataagaacaatatagacatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaa 261  Q
    |||| |||||||||||||||| ||||| |||| ||| |||||||| ||||| ||||| || ||||| || |||||||  ||||||||||| |  ||||||    
T  31932142 catgaggtctttgatattttgaataagcacaacataaacatgaaagtgattcaaatcctccttgatgagtttgacagtgagaagggaatccgaatagcaa 31932241  T
Q  262 gccaattcctcacaattgaagctaatcgccaactttaaaccttgata 308  Q
     ||||||| ||| ||||||| ||||| |||| ||||| || ||||||    
T  31932242 accaattcgtcaaaattgaaactaatagccagctttagactttgata 31932288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 321 - 428
Target Start/End: Complemental strand, 35164401 - 35164294
Alignment:
Q  321 tcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactgacagtct 420  Q
    |||||||||| |||||||||||| ||||| |||||||| ||||||||||| | |||| |  ||||| ||||| ||| |||||| |||||| || ||||||    
T  35164401 tcattctcatctattttttacttgtgaatatgttgatgttgtgtggacaggtgctataaattggatgaatataagcgtcaatattagcaattggcagtct 35164302  T
Q  421 attttgca 428  Q
    ||| ||||    
T  35164301 attctgca 35164294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 266
Target Start/End: Complemental strand, 6180384 - 6180221
Alignment:
Q  103 aaatccgcacactgattgccttctctgagcgaacggtgaaggaagaaatttcgagaactcatgtggtctttgatattttggataagaacaatatagacat 202  Q
    ||||| ||||| |||||||||||||| |||||| |||||||  |||||||||| | ||| ||| |||||||||| || || || || |||  ||||||||    
T  6180384 aaatctgcacattgattgccttctcttagcgaatggtgaagagagaaatttcgcgcactgatgaggtctttgatgttctgaatgagcacagcatagacat 6180285  T
Q  203 gaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaa 266  Q
    || | || || ||| | || ||||| ||||| || | |||||| || || | ||||||||||||    
T  6180284 gacaatggttcaaaccatccttgatgaggttaaccgtaagaagagagtccgagtagcaagccaa 6180221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 7469845 - 7469927
Alignment:
Q  46 ggaggagaagagtgaatagacaactcgacatcattcgagactctaaatttgattctaaaatccgcacactgattgccttctct 128  Q
    ||||||||||||||||| | ||| ||||||||| |||||  ||||| |||||   | ||||||||||| |||||||| |||||    
T  7469845 ggaggagaagagtgaattgtcaagtcgacatcagtcgaggttctaagtttgaccatgaaatccgcacattgattgccctctct 7469927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 168 - 308
Target Start/End: Original strand, 45516559 - 45516699
Alignment:
Q  168 gtctttgatattttggataagaacaatatagacatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaat 267  Q
    ||||||||| ||||| || ||||||  ||| |||||||| ||||||||||| |||||||| | |||||| ||||||||||||||||  ||||| ||||||    
T  45516559 gtctttgatgttttgtatgagaacataataaacatgaaaatgatttaaatcatctttgatgaagttgactgcaagaagggaatctgaatagcacgccaat 45516658  T
Q  268 tcctcacaattgaagctaatcgccaactttaaaccttgata 308  Q
    ||||||||||||||||| ||||||||| |||| ||||||||    
T  45516659 tcctcacaattgaagctgatcgccaaccttaacccttgata 45516699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 109 - 308
Target Start/End: Complemental strand, 44093981 - 44093782
Alignment:
Q  109 gcacactgattgccttctctgagcgaacggtgaaggaagaaatttcgagaactcatgtggtctttgatattttggataagaacaatatagacatgaaact 208  Q
    ||||||||||| || |||||||  ||  | ||||||  |||||| ||||||  ||||  ||||||||| ||||| || ||||||| ||| |||||||| |    
T  44093981 gcacactgatttccctctctgaatgagtgatgaaggttgaaattacgagaaaccatgatgtctttgatgttttgaatgagaacaacataaacatgaaaat 44093882  T
Q  209 gatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaactttaaaccttgata 308  Q
    |||||||||| |||||||| |||||||| |||||||| || ||||  ||||| |||||||||| |||||| ||||| | ||||||| |||| ||||||||    
T  44093881 gatttaaatcatctttgatgaggttgactgcaagaagtgagtctgaatagcacgccaattcctaacaatttaagctgaccgccaaccttaacccttgata 44093782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 42767776 - 42767690
Alignment:
Q  47 gaggagaagagtgaatagacaactcgacatcattcgagactctaaatttgattctaaaatccgcacactgattgccttctctgagcg 133  Q
    |||||||||||||||| | ||| ||||||||| ||||| |||||||||||    ||||||||||||| |||||||| ||||| ||||    
T  42767776 gaggagaagagtgaattgtcaagtcgacatcagtcgaggctctaaatttggccataaaatccgcacattgattgccctctctaagcg 42767690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 109 - 308
Target Start/End: Complemental strand, 35297163 - 35296964
Alignment:
Q  109 gcacactgattgccttctctgagcgaacggtgaaggaagaaatttcgagaactcatgtggtctttgatattttggataagaacaatatagacatgaaact 208  Q
    ||||||||||| || |||||||| ||  | ||||||  |||||| ||||||  ||||  ||||||||||||||| || ||||||  |||||||||||| |    
T  35297163 gcacactgatttccctctctgagtgagtgatgaaggttgaaattacgagaaaccatgatgtctttgatattttgaatgagaacagcatagacatgaaaat 35297064  T
Q  209 gatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaactttaaaccttgata 308  Q
    |||||||||| || ||||| |||||||| ||||||||||| ||||  ||||| ||||||||||||||||| ||| | | ||||||| |||| ||||||||    
T  35297063 gatttaaatcatcattgatcaggttgactgcaagaagggagtctgaatagcacgccaattcctcacaatttaagttgaccgccaaccttaacccttgata 35296964  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 109 - 308
Target Start/End: Complemental strand, 14688690 - 14688491
Alignment:
Q  109 gcacactgattgccttctctgagcgaacggtgaaggaagaaatttcgagaactcatgtggtctttgatattttggataagaacaatatagacatgaaact 208  Q
    ||||| ||||| || |||||||| ||  | ||||||  |||||| ||||||  ||||  ||||||||| ||||| || ||||||| ||| |||||||| |    
T  14688690 gcacattgatttccctctctgagtgagtgatgaaggttgaaattacgagaaaccatgatgtctttgatgttttgaatgagaacaacataaacatgaaaat 14688591  T
Q  209 gatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaactttaaaccttgata 308  Q
    |||||||||| |||||||| |||||||  ||||||||||| ||||  ||||| ||||||||||||||||| ||| | | ||||||| |||| | ||||||    
T  14688590 gatttaaatcatctttgatgaggttgattgcaagaagggagtctgaatagcacgccaattcctcacaatttaagttgaccgccaaccttaacctttgata 14688491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 311
Target Start/End: Complemental strand, 44024193 - 44024042
Alignment:
Q  160 ctcatgtggtctttgatattttggataagaacaatatagacatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagc 259  Q
    |||||| |||||||||||||||| ||||| |||| ||| |||||||| |||||||  || ||  | || ||||||||||  |||| |||||| | |||||    
T  44024193 ctcatgaggtctttgatattttgtataagcacaacataaacatgaaagtgatttagctcctccgtaatgaggttgacagtgagaatggaatccgagtagc 44024094  T
Q  260 aagccaattcctcacaattgaagctaatcgccaactttaaaccttgatagtg 311  Q
    ||| ||  ||  ||  |||||| || || |||||||||| ||||||||||||    
T  44024093 aagtcacctcgccaagattgaaactcatagccaactttagaccttgatagtg 44024042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 109 - 308
Target Start/End: Complemental strand, 14099 - 13900
Alignment:
Q  109 gcacactgattgccttctctgagcgaacggtgaaggaagaaatttcgagaactcatgtggtctttgatattttggataagaacaatatagacatgaaact 208  Q
    ||||||||||| || |||||||| ||  | ||||||  |||||| ||||||  ||||  ||||||||||||||| || ||||||  ||| |||||||| |    
T  14099 gcacactgatttccctctctgagtgagtgatgaaggttgaaattacgagaaaccatgatgtctttgatattttgaatgagaacagcataaacatgaaaat 14000  T
Q  209 gatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaactttaaaccttgata 308  Q
     ||||||||| |||||||| |||||||| ||||||||||| ||||  ||||| ||||||||||||||||| ||| | | ||||||| |||| ||||||||    
T  13999 aatttaaatcatctttgatgaggttgactgcaagaagggagtctgaatagcacgccaattcctcacaatttaagttgaccgccaaccttaacccttgata 13900  T

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Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 110 - 306
Target Start/End: Complemental strand, 29259303 - 29259107
Alignment:
Q  110 cacactgattgccttctctgagcgaacggtgaaggaagaaatttcgagaactcatgtggtctttgatattttggataagaacaatatagacatgaaactg 209  Q
    |||||| ||| || |||||||| ||  | ||||||  |||||| ||||||  ||||  ||||||||||||||| || ||||||  ||| |||||||| ||    
T  29259303 cacactaatttccctctctgagtgagtgatgaaggttgaaattacgagaaaccatgatgtctttgatattttgaatgagaacagcataaacatgaaaatg 29259204  T
Q  210 atttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaactttaaaccttga 306  Q
    ||||||||| |||||||| |||||||| ||||||||||| ||||  ||||| ||||||||||||||||| ||| | | ||||||| |||| ||||||    
T  29259203 atttaaatcatctttgatgaggttgactgcaagaagggagtctgaatagcacgccaattcctcacaatttaagttgaccgccaaccttaacccttga 29259107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 187 - 308
Target Start/End: Complemental strand, 13821386 - 13821265
Alignment:
Q  187 agaacaatatagacatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaa 286  Q
    ||||||| ||| |||||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||  ||||| | ||||||||||||||| ||| | |    
T  13821386 agaacaacataaacatgaaaatgatttaaatcatctttgatgaggttgactgcaagaagggagtctgaatagcacgtcaattcctcacaatttaagttga 13821287  T
Q  287 tcgccaactttaaaccttgata 308  Q
    |||||||| |||| | ||||||    
T  13821286 tcgccaaccttaaccattgata 13821265  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 104 - 278
Target Start/End: Original strand, 13075227 - 13075401
Alignment:
Q  104 aatccgcacactgattgccttctctgagcgaacggtgaaggaagaaatttcgagaactcatgtggtctttgatattttggataagaacaatatagacatg 203  Q
    |||| ||||||||||||||||||||||||||| | ||||    |||||||| ||||||| || |||||||||| |  | ||| ||||||| ||| |||||    
T  13075227 aatctgcacactgattgccttctctgagcgaatgttgaacagtgaaatttctagaactcgtgaggtctttgatgtcctagatgagaacaacataaacatg 13075326  T
Q  204 aaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaatt 278  Q
    ||| ||||||||||| || || ||||| ||||| |  || || |||| ||  |||||||| ||||||||| ||||    
T  13075327 aaaatgatttaaatcatcctttataagattgacggtgaggagagaatttgaatagcaagctaattcctcaaaatt 13075401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 103 - 269
Target Start/End: Original strand, 26706713 - 26706879
Alignment:
Q  103 aaatccgcacactgattgccttctctgagcgaacggtgaaggaagaaatttcgagaactcatgtggtctttgatattttggataagaacaatatagacat 202  Q
    ||||| ||||||||||| ||||||||||| ||| | |||||  || |||||| |||| | ||| |||| ||||| || || || || |||| ||||||||    
T  26706713 aaatctgcacactgattaccttctctgagtgaatgatgaagagagtaatttctagaagtgatgaggtccttgatgttctgaattagcacaacatagacat 26706812  T
Q  203 gaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattc 269  Q
    || | |||||||| || |   |||| || ||||||| |||||| ||||||| |||||| ||||||||    
T  26706813 gataatgatttaattcatgcatgatgagattgacagtaagaagagaatctgagtagcatgccaattc 26706879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 266
Target Start/End: Original strand, 40736660 - 40736817
Alignment:
Q  109 gcacactgattgccttctctgagcgaacggtgaaggaagaaatttcgagaactcatgtggtctttgatattttggataagaacaatatagacatgaaact 208  Q
    |||||||||||||||||||| |||||| |||||||  |||||||||| | ||  ||| |||||||||| || |  || || |||  |||||||||| | |    
T  40736660 gcacactgattgccttctcttagcgaatggtgaagagagaaatttcgcgcaccgatgaggtctttgatgttctaaatgagcacagcatagacatgataat 40736759  T
Q  209 gatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaa 266  Q
    |||| ||| | || ||||| || || || | |||||| ||||||  ||||||||||||    
T  40736760 gattcaaaccatccttgatgagattaaccgtaagaagagaatctaagtagcaagccaa 40736817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 445
Target Start/End: Complemental strand, 28574360 - 28574288
Alignment:
Q  374 ctatgagatggataaatatgagcatcaatactagcaactgacagtctattttgcatgatgtcca-tctcattg 445  Q
    ||||||||||||| ||||||||  ||||||||||||| || || |||||||||||  ||||||| ||||||||    
T  28574360 ctatgagatggatgaatatgagtgtcaatactagcaattggcaatctattttgcaatatgtccagtctcattg 28574288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 147 - 308
Target Start/End: Original strand, 49147825 - 49147986
Alignment:
Q  147 gaaatttcgagaactcatgtggtctttgatattttggataagaacaatatagacatgaaactgatttaaatcttctttgataaggttgacagcaagaagg 246  Q
    |||||| ||||||  ||||  |||||| || ||||| || ||||||| ||| ||||| || ||||||||||| |||||||| |||||||| |||||||||    
T  49147825 gaaattacgagaaaccatgatgtctttaatgttttgaatgagaacaacataaacatggaaatgatttaaatcatctttgatgaggttgactgcaagaagg 49147924  T
Q  247 gaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaactttaaaccttgata 308  Q
    || ||||  ||||| |||||| |||||||||| ||||| ||||||||| |||| ||||||||    
T  49147925 gagtctgaatagcacgccaatacctcacaatttaagctgatcgccaaccttaacccttgata 49147986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 36 - 211
Target Start/End: Complemental strand, 43367807 - 43367634
Alignment:
Q  36 caggtcctctggaggagaagagtgaatagacaactcgacatcattcgagactctaaatttgattctaaaatccgcacactgattgccttctctgagcgaa 135  Q
    |||||||| |||||| |||||||| || ||||||||| |||||||||| ||||  |  ||| ||  ||| ||||||| ||||||||||||||||||||||    
T  43367807 caggtcctttggaggtgaagagtggattgacaactcgtcatcattcgaaactcctagcttggttacaaagtccgcacgctgattgccttctctgagcgaa 43367708  T
Q  136 cggtgaaggaagaaatttcgagaactcatgtggtctttgatattttggataagaacaatatagacatgaaactgat 211  Q
     | |||||| ||||||||| || |||||||  ||||||||| |||| ||||  ||| | |||||||||||| ||||    
T  43367707 tgctgaagggagaaatttctagtactcatgatgtctttgatgttttagata--aacgacatagacatgaaaatgat 43367634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 428
Target Start/End: Complemental strand, 3423360 - 3423246
Alignment:
Q  314 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 413  Q
    |||||| |||||||||  | |||||| ||| ||| | |||||||||||| |||| || |  |||||||||||| |||||||   ||||||||||||| ||    
T  3423360 atgaaactcattctcacctctttttttcttgtgattatgttgatgctgtttggaaaggtgttatgagatggatgaatatgacggtcaatactagcaattg 3423261  T
Q  414 acagtctattttgca 428  Q
     || |||||||||||    
T  3423260 gcattctattttgca 3423246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 428
Target Start/End: Original strand, 22163917 - 22164031
Alignment:
Q  314 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 413  Q
    |||||| |||||||||  | |||||| ||| ||| | || ||||||||| |||| || |  |||||||||||| |||||||   ||||||||||||| ||    
T  22163917 atgaaactcattctcacctctttttttcttgtgattatgctgatgctgtttggaaaggtgttatgagatggatgaatatgacggtcaatactagcaattg 22164016  T
Q  414 acagtctattttgca 428  Q
     || |||||||||||    
T  22164017 gcattctattttgca 22164031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 47158821 - 47158894
Alignment:
Q  103 aaatccgcacactgattgccttctctgagcgaacggtgaaggaagaaatttcgagaactcatgtggtctttgat 176  Q
    ||||| ||||| |||||||||||||| |||||| |||||||  |||||||||  | ||| ||| ||||||||||    
T  47158821 aaatctgcacattgattgccttctcttagcgaatggtgaagagagaaatttcacgcactgatgaggtctttgat 47158894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 308
Target Start/End: Original strand, 16768109 - 16768179
Alignment:
Q  238 gcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaactttaaaccttgata 308  Q
    ||||||||||| ||||  ||||| ||||||||||||||||| ||| | | ||||||| |||| ||||||||    
T  16768109 gcaagaagggagtctgaatagcacgccaattcctcacaatttaagttgaccgccaaccttaacccttgata 16768179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 428
Target Start/End: Complemental strand, 33631529 - 33631415
Alignment:
Q  314 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 413  Q
    |||||| |||||||||  | |||||| ||| ||| | || ||||||||| |||| || |  |||||||||||| |||||||   ||||||||||||| ||    
T  33631529 atgaaactcattctcacctctttttttcttgtgattatgctgatgctgtttggaaaggtgttatgagatggatgaatatgacggtcaatactagcaattg 33631430  T
Q  414 acagtctattttgca 428  Q
     || |||||||||||    
T  33631429 gcattctattttgca 33631415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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