View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_193 (Length: 272)
Name: NF11557A_low_193
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_193 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 260
Target Start/End: Complemental strand, 38244002 - 38243750
Alignment:
| Q |
7 |
aaaccattactacgccaccgccgcagataccgcctttcgatcaccaacctcatccatattcttggaccatccgccgatgaagttttcgccaagcgtaaac |
106 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | |||||||||||||||||||||||| |||||||||||| |
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| T |
38244002 |
aaaccattactacgccaccgccgcagataccgccgttcgatcaccaacctcatccgtattat-ggaccatccgccgatgaagttttctccaagcgtaaac |
38243904 |
T |
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| Q |
107 |
ggttccttggtccttccttgttccatttctatcaaaaacccgtcagttcctatcatcaaactcatttctcttctttaatttcatttattgtttgttacnn |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38243903 |
agttccttggtccttccttgttccatttctatcaaaaacccgtcagttcctatcatcaaactcatttctcttctttaatttcatttattgtttgttactt |
38243804 |
T |
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| Q |
207 |
nnnnnnnatagaagaagaaattgatgatgaatgatgtttgtatagttgaatatt |
260 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38243803 |
tttttttatagaagaagaaattgatgatgaatgatgtttttatagttgaatatt |
38243750 |
T |
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