View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11557A_low_197 (Length: 269)
Name: NF11557A_low_197
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_197 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 7 - 269
Target Start/End: Original strand, 17432070 - 17432332
Alignment:
| Q |
7 |
gttcttcctacaagatgtcggaaaaggagttggcgcaaccgttcaaccagttatcggcatcaatggaaaggtttggtcctacaactcatttggaacaata |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17432070 |
gttcttcctacaagatgtcggaaaaggagttggcgcaaccgttcaaccagttatcggcatcaatggaaaggtttggtcctacaactcatttggaacaata |
17432169 |
T |
|
| Q |
107 |
tttgtagtcgatgaccctattatgttaaaccctaatccaggttcaactcaaatcggaagggctcaaggtatgattacagtaacatctcttgatggttcaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17432170 |
tttgtagtcgatgaccctattatgttaaaccctaatccaggttcaactcaaatcggaagggctcaaggtatgattacagtaacatctcttgatggttcaa |
17432269 |
T |
|
| Q |
207 |
atgtgagcatagttttgtcacttgtgttcaacaatgggcaatatagtggtagcactttggaga |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17432270 |
atgtgagcatagttttgtcacttgtgttcaacaatgggcaatatagtggtagcactttggaga |
17432332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 7 - 269
Target Start/End: Original strand, 17435943 - 17436205
Alignment:
| Q |
7 |
gttcttcctacaagatgtcggaaaaggagttggcgcaaccgttcaaccagttatcggcatcaatggaaaggtttggtcctacaactcatttggaacaata |
106 |
Q |
| |
|
||||| |||||||||||| |||| |||| | |||||||||| || |||||||||||||| |||| ||||||||| ||| ||||||| ||||||||| |
|
|
| T |
17435943 |
gttctacctacaagatgtgggaagaggattcaacgcaaccgttatgccggttatcggcatcaacggaagggtttggtcttaccactcattcggaacaata |
17436042 |
T |
|
| Q |
107 |
tttgtagtcgatgaccctattatgttaaaccctaatccaggttcaactcaaatcggaagggctcaaggtatgattacagtaacatctcttgatggttcaa |
206 |
Q |
| |
|
||||| || |||||||| | ||||||| ||||| |||| |||||||||||| |||||||| |||||| | |||||||| |||||||| |||||| ||| |
|
|
| T |
17436043 |
tttgtcgttgatgaccccgtcatgttaagccctagtccattttcaactcaaattggaagggcacaaggtgtaattacagtgacatctctagatggtgcaa |
17436142 |
T |
|
| Q |
207 |
atgtgagcatagttttgtcacttgtgttcaacaatgggcaatatagtggtagcactttggaga |
269 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17436143 |
atgtgaacatagttttgtcacttgtgttcaacaatggggaatatagtggtagcactttggaga |
17436205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University